Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h09
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    29   1.8  
AF024500-3|AAB70363.1|  314|Caenorhabditis elegans Hypothetical ...    27   5.4  
U97010-2|AAB52319.1|  198|Caenorhabditis elegans Hypothetical pr...    27   7.1  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    27   9.4  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    27   9.4  

>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 174 TAVYRIYEEFCNETTLHGLKHTVEKSLHW 88
           T +     +FC +TT HG+      SL+W
Sbjct: 37  TQIQHSVRDFCEQTTFHGVNMIFTTSLYW 65


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 174 TAVYRIYEEFCNETTLHGLKHTVEKSLHW 88
           T +     +FC +TT HG+      SL+W
Sbjct: 37  TQIQHSVRDFCEQTTFHGVNMIFTTSLYW 65


>AF024500-3|AAB70363.1|  314|Caenorhabditis elegans Hypothetical
           protein K06H6.3 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 122 PCKVVSLQNSSYILYTAVMDSLAESIADFIRVRQLNIAVAILLSVMYLAYQY 277
           P  V ++QN+ Y +  A +D+   S+   +R+    I   +LLS     YQ+
Sbjct: 112 PALVYAVQNNLYYVALANIDATTYSVTLQLRILTTAILSVVLLSKKLSGYQW 163


>U97010-2|AAB52319.1|  198|Caenorhabditis elegans Hypothetical
           protein W08A12.3 protein.
          Length = 198

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 18  PRLKIRSESKTIINLNIIIFTSQTNASSSRQYV*G 122
           P  K+R ES+  IN N     S  NAS + +Y  G
Sbjct: 125 PSKKVRMESEETINTNTTNSQSTINASENGEYTGG 159


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 169 SRHGLPRREHRGLHTRPTTKYSGGNSAVCNVPRLSI 276
           +R  +PR         PT++ S  +S   NVPR S+
Sbjct: 27  ARFRMPRNNKTSAGAPPTSELSSASSPSINVPRFSL 62


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 169 SRHGLPRREHRGLHTRPTTKYSGGNSAVCNVPRLSI 276
           +R  +PR         PT++ S  +S   NVPR S+
Sbjct: 27  ARFRMPRNNKTSAGAPPTSELSSASSPSINVPRFSL 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,251,419
Number of Sequences: 27780
Number of extensions: 194638
Number of successful extensions: 558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)