Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h07
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    28   1.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.4  
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass...    27   3.4  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.0  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    25   7.9  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   7.9  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
 Frame = -3

Query: 512 SATLDSAQERT*RQSNSEPLAPTQSNTVRVT-TNSALAHPIADVRILAWPLPGTEFNAKY 336
           S  L SA+E     S    ++ + + TV V  T+S    P A       P+P  + +A  
Sbjct: 87  SVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSVACFPYA-TSDAPNPIPRGD-SATS 144

Query: 335 MPSRSAKSTVDFSISKITLYSPSTGLLSESGKNVANSSILQS*VKIYNPPAYTHLENE 162
                  S  D S + IT  SPST ++     + + SS L     I +P   ++ +NE
Sbjct: 145 TSIAPTYSASDSSATTITSSSPSTSIIGTGSTDTSVSSTLTYHTPIASPTTSSNSDNE 202


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
 Frame = -3

Query: 593 TTIGECFLGKSLLVHSQTRVAVAACCISATLDSAQERT*RQSNS--EPLAPTQSNTVRVT 420
           +T  E  +  S L  S    +     +S++  S+Q      S+S     APT +++  ++
Sbjct: 152 STSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLS 211

Query: 419 TNSALAHPIADVRILAWPLPGTEFNAKYMPSRSAKSTVDFSISKITLYSPSTGLLSESGK 240
           ++S ++   +     +  L  +  +   +PS S+ S+   S S  +  S ST   S S  
Sbjct: 212 SSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSS-STSSSLSSSSSSSTASSSSSSS 270

Query: 239 NVANSS 222
           ++ +SS
Sbjct: 271 SIISSS 276


>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
           assembly of the V-ATPase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 507 GTDTARCHCYSSLAVDKK*LAQKAFSYCCQLVS 605
           GT TA  +C SSL+++KK +A  AFS    LV+
Sbjct: 98  GTVTAVWYCTSSLSIEKK-IALCAFSAILVLVA 129


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
 Frame = -3

Query: 608 RANKLTTIGECFLGKSLLVHSQTRVAVAACCISATLDSAQERT*RQ------SNSEPLAP 447
           + NKL TI +  LG S L H Q +       I+ +      R   Q      SN+ PL P
Sbjct: 413 KLNKLPTIDKQILGTSSLTHFQDKTTAIEHSINKSNSKQPPRFKFQLPPRPTSNTLPLEP 472

Query: 446 TQSNTVRVTTNS 411
            +    R + +S
Sbjct: 473 EEELVTRYSVSS 484


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 268 EGEYNVILEILKSTVDFADLLGIYFAL 348
           EG++ ++L ILK  +   D+  + F+L
Sbjct: 37  EGKFKLVLSILKQCIGVKDIASLRFSL 63


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 45  VSRHLNKVQNDPISLRELLSLNICTLSYGLQIFWDLGICFV 167
           + R LN + +  I+ R++   NI    YG+    D G C V
Sbjct: 568 ILRGLNYIHSQGIAHRDIKPENILISEYGVLRITDFGACDV 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,486
Number of Sequences: 5004
Number of extensions: 64325
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)