Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h07
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.23 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 566  KSLLVHSQTRVAVAACCISATLDSAQERT*RQSNSEPLAPTQSNTVRVTTNSALAH 399
            ++LL  S+ ++ V A     T D +     R   S+P+ P  +  + V TNS   H
Sbjct: 1425 ENLLCGSRYQIYVTAYNGIGTGDPSDMLNTRTKGSKPIIPEAARFIEVATNSITLH 1480


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 280 NVILEILKSTVDFADLLGIYF 342
           N++ E + +T D   LLG YF
Sbjct: 278 NMVAETMPATSDAVPLLGTYF 298


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 367 LYQAQSLMQSICPVDQQNLLLTSVFPKSH 281
           ++QA SL  +  PVDQQ   L+ + P+++
Sbjct: 501 IFQAPSLYDTREPVDQQ---LSGISPRNY 526


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,413
Number of Sequences: 438
Number of extensions: 4250
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)