Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12h05
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689... 28 5.3
02_05_0424 + 28841562-28841569,28841636-28841714,28841826-288418... 28 5.3
01_01_0018 + 139150-140415 28 5.3
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 27 7.0
05_01_0186 - 1337657-1337977,1339142-1339203,1339297-1339346,133... 27 7.0
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320... 27 7.0
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 27 9.2
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658... 27 9.2
05_01_0576 - 5130589-5131995 27 9.2
>10_08_0607 +
19168164-19168358,19168594-19168716,19168791-19168946,
19169129-19169314,19169467-19169583,19169721-19169774,
19169854-19169925,19170430-19170535,19170658-19170754,
19171090-19171184,19172318-19172420,19172699-19172886,
19174928-19175183,19177187-19177325
Length = 628
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 98 IRPKIFFFEIYNGSGFSQYRPTALYSWVHGSLSRVQVSDRRYVWLDNTQDPSRSERAA 271
+ P +F +Y G P+ S S R Q++ +WL Q+P+ S R +
Sbjct: 383 VYPDVFMTNLYYGGTRIAGDPSNCSSPAAVSTVRKQIASHISLWLSQCQEPTSSRRTS 440
>02_05_0424 +
28841562-28841569,28841636-28841714,28841826-28841894,
28841965-28842054,28842132-28842270,28842523-28842625,
28842708-28842760,28842849-28842915,28843087-28843195,
28843588-28843653,28843740-28843808,28843893-28843959,
28844038-28844154,28844433-28844656,28845083-28845094
Length = 423
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 441 SVRSDGAEILRILVSWDACKRDR 373
SV S+ +++ L SWD CKR +
Sbjct: 251 SVSSEAVDLISSLCSWDPCKRPK 273
>01_01_0018 + 139150-140415
Length = 421
Score = 27.9 bits (59), Expect = 5.3
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = +1
Query: 139 WI*SVSPNRIIFLGTRV---IVPSTSIGSAIRMARQHTRSFSIRACS-IQRGWCYPIERP 306
W + S NR I L T + I + S + + H CS + C +++P
Sbjct: 86 WASAQSHNRCIILDTDIAEAIASTESYDFLVDILHNHREKHKSTPCSTLTTKRCRLVDQP 145
Query: 307 MTSRSTVQHRTR*TS*THVSVMAIPFT 387
TSR QH+ + T+ AIP T
Sbjct: 146 STSRPPYQHQLPLFAPTYTP--AIPIT 170
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 473 FRS*HGISLAEVCVQTGQKSFVSWYHGMLVNGIAITETCVHDVYLVLCWT 324
+RS + LA + ++ ++ S+ HG + G+ T Y VL WT
Sbjct: 310 YRSEEHVKLASIAMEIAKEMEGSFMHGNVFAGLLRTNFNAQFWYRVLAWT 359
>05_01_0186 -
1337657-1337977,1339142-1339203,1339297-1339346,
1339447-1339544,1340622-1341002,1341123-1341128,
1341380-1341886,1342039-1342113,1342209-1342397
Length = 562
Score = 27.5 bits (58), Expect = 7.0
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 320 LPSSTERDRHRERTFP*WRSRLQASHDTRIRRISAPSE--RTLRPKIYRVSYGSTLRVSE 493
LPS E ++ R FP WRS L + ++ AP + + PK+Y ++ GS ++ +
Sbjct: 462 LPSRQELEQTRNMFFPYWRSVLTSRFTVKLFPSYAPMDDCQPSLPKLY-MAGGSGNKLKD 520
Query: 494 VATEP 508
+ P
Sbjct: 521 KGSFP 525
>01_01_0424 +
3200223-3200634,3200677-3200836,3200987-3201342,
3201958-3203252
Length = 740
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 342 IDIVNARFRNGDPVYKHPMIPGYEGFLPRLNAHFGQRYTVSATEALSEFQRLQLNQRAAR 521
+DI N + + P + +IP + + + N FGQ A E+ EF L++ A+
Sbjct: 453 LDIQNNQINDSFPCWMR-VIPRLQVLILKSNKFFGQVTPTVAEESTCEFPSLRILDLASN 511
Query: 522 N 524
N
Sbjct: 512 N 512
>08_02_0076 +
11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -2
Query: 297 YRIAPASLNAARSDREGSCVLSSHTYRRSDTCTRDNDPCTQEYNAVGR 154
YRIA A + E L +H Y+R+ T R+ PC E GR
Sbjct: 216 YRIAKQVSEAL--ELESLDYLYAHKYQRTRTDHRETSPCQSEPKVHGR 261
>05_02_0099 -
6582498-6582725,6583148-6583235,6583437-6583830,
6585855-6585990,6586413-6586931
Length = 454
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 123 KFTMALDLVSIAQPHYIPGYTGHCPEYKYRI 215
+F M ++L+S + Y+ G GHC E +R+
Sbjct: 169 EFEMEVELLSRLRSPYLLGLIGHCSEGGHRL 199
>05_01_0576 - 5130589-5131995
Length = 468
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 185 GSLSRVQVSDRRYVWLDNTQDPSRSERAAFREA 283
G RV V +R W D +DP+ A FR A
Sbjct: 102 GGGRRVWVRERSTEWWDRMRDPAACPEAEFRRA 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,962,485
Number of Sequences: 37544
Number of extensions: 331145
Number of successful extensions: 822
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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