Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12g22
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni...    74   2e-14
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub...    53   4e-08
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    42   7e-05
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    31   0.18 
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    27   1.7  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   4.0  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   6.9  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   6.9  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    25   9.1  

>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
           Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
 Frame = +3

Query: 63  STAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTX--SVITNENIL 236
           S  FC+ CG++L       +  C  C++ Y ++ ++ +  +     +    ++    +I+
Sbjct: 6   SLIFCSECGNLLESTTAQWTT-CDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSIV 64

Query: 237 HTDGP--EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 395
             +    E   +E KC KCG D M++ TLQLRSADEG TVFY C +C YK + N+
Sbjct: 65  QVESQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTNN 119


>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
           subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
 Frame = +3

Query: 72  FCARCGS-ILPLLQEFG--SVKCYTCKAHYEADNYSKMKFQYTIHFNTXSVITNENILHT 242
           FC  CG+ ++  + E G  +  C TC  H+    +   + ++        V+  E    +
Sbjct: 3   FCPTCGNHLIVAVDEEGRNAFDCRTCPYHFPISTFLYSRHEFA-QKEVDDVLGGEEAFES 61

Query: 243 DGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETEN 392
           +       E    KC  +R  +  LQ+RSADE  + FY C KCK++  EN
Sbjct: 62  NQQTEVTCEN--TKCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWREN 109


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 216 ITNENILHTDG--PEGPVVER-KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 371
           +  EN+ H  G  P+  V +   C KC   ++SY  +Q RSADE  T F  C  C
Sbjct: 232 LEQENLFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVC 286


>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
 Frame = +3

Query: 72  FCARCGSIL-PLLQEFGSVKCYTCK-AHYEADNYSKMKFQYTIHFNTXSVITNENILHTD 245
           +C  C ++L P   +   V    C+   Y     +   +++ +  +     T  +   TD
Sbjct: 6   YCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTD 65

Query: 246 GPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 377
            P  P  +++C +C      +     R  D   T+ Y C+ C +
Sbjct: 66  -PTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGF 108


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 630 KTWVLRLISIEFTV*KLSFQEMELKLRTSYMVINFN 523
           K WV +++S  F    L+FQ+ME++ R S   I FN
Sbjct: 543 KLWVEKIVS--FIEQFLNFQDMEIQRRASEFYILFN 576


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 399 RLLYTSFKVVKGKLGNRIIVSESLYAKIS 485
           RLL T   ++K   GNR++ S  ++ K++
Sbjct: 146 RLLITLHHIIKAMAGNRLLRSRQIFYKLA 174


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 18/80 (22%), Positives = 34/80 (42%)
 Frame = +1

Query: 244 MVLRVQLWRENALNAVTTECHMQLYSYDRPMKDKQFSTHV*SANTRKLKTPKGCFILVLR 423
           ++ ++ L+ EN  +++         + D   +DK+  + V   N  KL T   C  L L+
Sbjct: 743 LLAKLVLFPENTADSLNEVLAAYKNTLDLCSQDKRKQSSVLKINLSKLFTLHSCLSLALQ 802

Query: 424 LSKENSAIESLYQNHFMQKS 483
                   + +YQ  F+  S
Sbjct: 803 RLGYGDVSKRMYQEIFVPDS 822


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 60  TSTAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMK 179
           TS   C R  S   +L       C  CK+  EA+   K+K
Sbjct: 268 TSVTSCLRSFSASEMLSSKNKFHCDVCKSLQEAEKRMKIK 307


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 198 NVLCIEISFYYNYQPHNVLYKCS--ISRSQTLVARVIWTHS 82
           +V+C    F+ +  P  V+Y C+  +  ++T +  ++W +S
Sbjct: 207 SVVCRLFDFFISSHPLTVVYTCAQVVLDNRTSIIELLWDNS 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,053
Number of Sequences: 5004
Number of extensions: 47880
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)