Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12g21
(430 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 34 0.011
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 31 0.057
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 28 0.53
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 26 2.2
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 2.9
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 2.9
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 3.8
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 25 5.0
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 25 5.0
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 5.0
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 25 5.0
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 25 6.6
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 25 6.6
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 24 8.7
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 24 8.7
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 24 8.7
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 24 8.7
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 24 8.7
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 24 8.7
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 33.9 bits (74), Expect = 0.011
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 205 PSSDMSADETSTPKNNKTLDVSDESGHELEADVDDIKEKKFLDEAIKAILDPHAFIPKNQ 384
P S++ ++ P +NK + +D L+ D D + EK+ +++K + ++ I +
Sbjct: 81 PISELEKEKLERPLSNKKKEKNDHKAESLKHDYDSVGEKRISKDSVKHLDKTYSSIDSKK 140
Query: 385 D 387
D
Sbjct: 141 D 141
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 31.5 bits (68), Expect = 0.057
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 163 GIISTAVSVQFXTNPSSD-MSADETSTPKNNKTLDVSDESGHE 288
GII+ Q ++PS D +S E STP + T+DV+D E
Sbjct: 3 GIITPQKQKQLMSSPSRDPLSTTELSTPTSQTTVDVNDTKKSE 45
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 28.3 bits (60), Expect = 0.53
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 220 SADETSTPKNNKTLDVSDESGHELEADVDDIKEKK 324
+AD+ + + + +++SD G ELE D D I+++K
Sbjct: 57 TADQENESEGSDEVELSDLEGIELEEDADLIRKRK 91
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 2.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 289 LEADVDDIKEKKFLDEAIKAILDPHAFIPKNQDELESYKL 408
L A + ++KK LD KA L PK +D+L YK+
Sbjct: 492 LTACLASSRKKKGLDAIDKAFLKALRNYPKAKDQLSKYKV 531
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.8 bits (54), Expect = 2.9
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 259 LDVSDESGHELEADVDDIKEKKFLDEA-IKAILDPHAFIPKNQDELESY 402
+ + D+ +EL +V + E + E + L H +PK+Q +LE+Y
Sbjct: 405 ITIPDDGLNELNNNVVEKAEPAPVSEIPLSKTLTSHKIVPKHQVDLENY 453
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 202 NPSSDMSADETSTPKNNK 255
NPSS + ++ +STPK NK
Sbjct: 182 NPSSVLPSNSSSTPKENK 199
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.4 bits (53), Expect = 3.8
Identities = 17/79 (21%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +1
Query: 199 TNPSSDMSADETSTPKNNKTL-DVSDESGHELEADVDDIK-EKKFLDEAIKAILDPHAFI 372
+ P+ +AD+ + ++ + + +D G L+ + ++K +KK ++ I+ ++D +
Sbjct: 1763 SGPAGLAAADQLNRAGHHVVIYERADRPGGLLQYGIPNMKLDKKVVERRIQLMIDEGIEV 1822
Query: 373 PKNQDELESYKLQLDELNK 429
N + ++ + LDEL+K
Sbjct: 1823 LTNVEVGKNGDVSLDELHK 1841
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 277 FHRRHLKFYYFSVCSSRLLTYLTKDLXG 194
F RR L + F C+S +L YL+ + G
Sbjct: 267 FFRRMLNAFIFIFCASPMLHYLSNIIFG 294
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 277 FHRRHLKFYYFSVCSSRLLTYLTKDLXG 194
F RR L + F C+S +L YL+ + G
Sbjct: 267 FFRRMLNAFIFIFCASPMLHYLSNIIFG 294
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 277 FHRRHLKFYYFSVCSSRLLTYLTKDLXG 194
F RR L + F C+S +L YL+ + G
Sbjct: 239 FFRRMLNAFIFIFCASPMLHYLSNIIFG 266
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 277 FHRRHLKFYYFSVCSSRLLTYLTKDLXG 194
F RR L + F C+S +L YL+ + G
Sbjct: 267 FFRRMLNAFIFIFCASPMLHYLSNIIFG 294
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 24.6 bits (51), Expect = 6.6
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +1
Query: 262 DVSDESGHELEADVDDIKEKKFLDEAIKAILDPHAFIPKNQDELESYKLQLDE 420
D SD E+EA + E E + LD + EL SY+ QL E
Sbjct: 222 DFSDILPEEIEATLKSAAEISMGTEITEEDLDNIVMLADQVLELASYRAQLSE 274
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 24.6 bits (51), Expect = 6.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 390 FILVFWNKSMRI*YRFYGFV*ELFLFNVIHVRF*FMSTFIG 268
F +VFW+KS F ++ +FL+ + V F+ + IG
Sbjct: 418 FNMVFWSKSSSSTVPFSSWLLLIFLYLLFTVPLSFVGSLIG 458
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 247 NNKTLDVSDESGHELEADVDDIKEKKFLDEAIKAILDPHAFI 372
N+ +L VS + H + DV+ + F LDP + I
Sbjct: 17 NSSSLPVSSKFSHTNDPDVEGVDNDSFSKALCNKDLDPSSTI 58
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 202 NPSSDMSADETSTPKNNKTLDVSDESGHELEADV 303
N S++E +T +NN +V DE+ ++LE+ V
Sbjct: 252 NDEKKQSSEEDTT-ENNSAAEVIDETVNDLESAV 284
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 132 NDRR*VHLPSWNNFNGSVSSVPNKS 206
NDR LPS +F+ SV++VP+ S
Sbjct: 332 NDRVSNVLPSITSFDSSVTTVPSNS 356
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 335 SSRNFFSLMSSTSASNSCPL 276
S +NF +LMS SA NS P+
Sbjct: 833 SLQNFSTLMSIVSALNSAPI 852
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 87 HISRNTSQKQTHFPRNRYVMYLSK 16
H SRNT++ Q R RY+ K
Sbjct: 327 HASRNTTETQVQSARERYLQRKKK 350
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 24.2 bits (50), Expect = 8.7
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 211 SDMSADETSTPKNNKTLD-VSDESGHELEADVDDIKEKKFLDEAIKAILDPH 363
S+++ E + + +D + ESG E E+ D KK+ D A D H
Sbjct: 43 SNIAVSENNIKYLRERIDALKVESGSERESQSDKDSSKKYSDSAKSTNSDDH 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,485
Number of Sequences: 5004
Number of extensions: 33177
Number of successful extensions: 139
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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