Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12g21
(430 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 30 0.013
DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450 monoo... 24 0.83
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 2.5
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 22 2.5
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 22 3.3
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 22 3.3
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 4.4
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.7
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 7.7
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 29.9 bits (64), Expect = 0.013
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 181 VSVQFXTNPSSDMSADETSTPKNNKTLDVSDESGHELEADVDD----IKEKKFLDEAIKA 348
+ + T + D+ + +N+K LD+ +L +DD + + K DE + +
Sbjct: 304 IKTELSTGMNDDIPPETEEEEENDKKLDLDSIDMMQLPIQLDDGIDILDDVKCEDERVIS 363
Query: 349 ILDPHAFIPKNQDELE 396
I D +P N++ ++
Sbjct: 364 IPDKEITVPSNEETID 379
>DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 499
Score = 23.8 bits (49), Expect = 0.83
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 292 EADVDDIKEKKFLDEAIKAIL 354
E DDIKE ++LD+ K L
Sbjct: 344 ELKYDDIKEMEYLDKVFKETL 364
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.2 bits (45), Expect = 2.5
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 241 PKNNKTLDVSDESGHELEADVDD--IKEKKFLDEAIKAILD 357
P N VS + H ++ + +KE K + E I+ +LD
Sbjct: 415 PANPDIFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLD 455
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 22.2 bits (45), Expect = 2.5
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 241 PKNNKTLDVSDESGHELEADVDD--IKEKKFLDEAIKAILD 357
P N VS + H ++ + +KE K + E I+ +LD
Sbjct: 121 PANPDIFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLD 161
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 21.8 bits (44), Expect = 3.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 162 WNNFNGSVSSVPNKSFVR 215
+NNFN + S+ N V+
Sbjct: 531 YNNFNSDIKSISNNEQVK 548
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 21.8 bits (44), Expect = 3.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 162 WNNFNGSVSSVPNKSFVR 215
+NNFN + S+ N V+
Sbjct: 531 YNNFNSDIKSISNNEQVK 548
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.4 bits (43), Expect = 4.4
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 172 STAVSVQFXTNPSSDMSADETSTPKNNKTLDVSDES 279
ST V NP SD+ S N VSD S
Sbjct: 317 STGNLVYIYNNPFSDVEERRVSKTAMNSNQIVSDNS 352
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 7.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 218 ISDEGFVXN*TDTAVEIIPTRQMNLATIILMNGNPHL 108
ISD F D I+ T LATI+++ PH+
Sbjct: 422 ISDWKFAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.6 bits (41), Expect = 7.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 218 ISDEGFVXN*TDTAVEIIPTRQMNLATIILMNGNPHL 108
ISD F D I+ T LATI+++ PH+
Sbjct: 422 ISDWKFAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.6 bits (41), Expect = 7.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 218 ISDEGFVXN*TDTAVEIIPTRQMNLATIILMNGNPHL 108
ISD F D I+ T LATI+++ PH+
Sbjct: 422 ISDWKFAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 7.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 218 ISDEGFVXN*TDTAVEIIPTRQMNLATIILMNGNPHL 108
ISD F D I+ T LATI+++ PH+
Sbjct: 422 ISDWKFAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 7.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 218 ISDEGFVXN*TDTAVEIIPTRQMNLATIILMNGNPHL 108
ISD F D I+ T LATI+++ PH+
Sbjct: 422 ISDWKFAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.6 bits (41), Expect = 7.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 218 ISDEGFVXN*TDTAVEIIPTRQMNLATIILMNGNPHL 108
ISD F D I+ T LATI+++ PH+
Sbjct: 422 ISDWKFAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 7.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 218 ISDEGFVXN*TDTAVEIIPTRQMNLATIILMNGNPHL 108
ISD F D I+ T LATI+++ PH+
Sbjct: 490 ISDWKFAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 526
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 7.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 218 ISDEGFVXN*TDTAVEIIPTRQMNLATIILMNGNPHL 108
ISD F D I+ T LATI+++ PH+
Sbjct: 490 ISDWKFAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 526
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 20.6 bits (41), Expect = 7.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 275 SSETSKVLLFFGVLVSSADIS 213
+S TSK ++ L SS DIS
Sbjct: 93 TSNTSKTIILSNKLESSDDIS 113
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,643
Number of Sequences: 438
Number of extensions: 1940
Number of successful extensions: 20
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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