Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12g18
         (215 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   1.0  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    24   2.4  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    23   7.2  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    23   7.2  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    22   9.6  

>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 138 GFSVYSCVLLKEFDTIKIQIFFLK 209
           G+ VY CV L E DT      FLK
Sbjct: 518 GWEVYDCVRLTEDDTTASSRIFLK 541


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 210 FLKKISEFLLYQILLKVHSYKQKNQT 133
           FL +  +F + +++  +HS  +KNQT
Sbjct: 372 FLCRFHQFGVMEVMPLIHSLAEKNQT 397


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 201 KISEFLLYQILLKVHSYK 148
           +I EF+ Y+ LLK +SY+
Sbjct: 205 RILEFMPYEPLLKYNSYR 222


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 207 LKKISEFLLYQILLKVHSYKQKNQTESISNATSMTKL 97
           L+K  + L  ++L ++   KQ+NQ    +NATS+ ++
Sbjct: 522 LEKQPQELENRLLQEISILKQRNQKFLKNNATSIQQI 558


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 204  KKISEFLLYQILLKVHSYKQ 145
            ++IS  +LYQILL+ H + +
Sbjct: 1097 REISIEVLYQILLQNHEFSE 1116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 785,685
Number of Sequences: 5004
Number of extensions: 11922
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)