Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12g18
         (215 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   0.72 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   1.7  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              19   5.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   6.7  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    19   6.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   8.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    19   8.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 0.72
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 39  NHFNGIYSSKMYRYMKFTKLILS*KLRY 122
           NH+  +Y  K   YM    L+LS  +++
Sbjct: 109 NHYLWLYHDKTLLYMSKLTLVLSCAMKF 136


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 1.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 161 TFKRI*YNKNSDIFFKKK 214
           ++ ++ YN+N + FFK K
Sbjct: 541 SYNQLNYNENIERFFKSK 558


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 29 IWQESL*WYLFV 64
          IW  SL WYL +
Sbjct: 6  IWLVSLYWYLIL 17


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 144 KNQTESISNATSMTKLI**ISCTY 73
           KN+ E+  + TS+ ++   I C Y
Sbjct: 451 KNKVETTHSGTSLFRINLGIECGY 474


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
          precursor protein.
          Length = 156

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 39 NHFNGIYSSKMYRYMKFT 92
          N+F  +Y + + R+ +FT
Sbjct: 20 NYFIFLYFNSLVRFRRFT 37


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 71  HFRRIDTIKVILAIL 27
           H + IDT++ +LAI+
Sbjct: 365 HSQLIDTLENVLAIV 379


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +2

Query: 95  INFVIEVALLIDSVW 139
           +NF++ +  L+D  W
Sbjct: 280 LNFILHLFCLLDVQW 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,219
Number of Sequences: 438
Number of extensions: 943
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3154875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)