Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12g16
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    28   0.92 
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    27   1.6  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   2.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   3.7  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.9  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.5  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    25   6.5  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   8.6  

>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 393 IRNLTVCTFGIVDLLKQDFYCYYEKARFRPYKHIVFRFPPGTEMKPPAQKWP 238
           +RN  + T  + DL++   Y +YEK RF+    +  +    T M  PA  +P
Sbjct: 270 LRNFLMRTH-LQDLIETTSYYHYEKFRFKQLSSLKEQSSLATRMGSPAPVYP 320


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +1

Query: 337 KILFQQVNDTKSAYSQISDLVNNQFSDGNTATTETIAVNGTTPTPKISRADFLNILDRNL 516
           K+  QQV +++     +S L++   + G TA   TIA+    P  K+  A+ +  ++ N 
Sbjct: 571 KLFVQQVKNSERT-RLVSVLLSGPIASGKTALAATIALGSEFPFVKLVSAESMVGMNENA 629

Query: 517 K 519
           +
Sbjct: 630 R 630


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -3

Query: 273 GTEMKPPAQKWPYLQFSYLCLYNAIY 196
           G E  PPA  W YLQFS+L  Y+A Y
Sbjct: 660 GFESAPPAA-W-YLQFSHLYGYSATY 683


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 367 KSAYSQISDLVNNQFSDGNTATTETIAVNGTTPTPKISRADFL 495
           +S  ++ +  V+NQ S G   T + +A    T TP++S+ + L
Sbjct: 319 ESENNESTFFVHNQNSSGQHQTLDFVASKPVTDTPELSKENTL 361


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +1

Query: 346  FQQVNDTKSAYSQISDLVNNQFSDGNTATTETIAVNGT--TPTPK---ISRA-DFLNILD 507
            FQ  +D K  +   ++L N   S       ET+  NG   +  PK   +S++  FL+I  
Sbjct: 850  FQNFSDLKHLFVSGNELANLSISSTAQVLLETLYANGNRLSSFPKNEALSKSLRFLDIST 909

Query: 508  RNLKGLA 528
             NL+ LA
Sbjct: 910  NNLQNLA 916


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 496 NILDRNLKGLARLRALEWREAKKDSAANLREYK 594
           N+L+ N++         W+ A+K+    +REY+
Sbjct: 39  NLLNNNIQARCSTNEASWKLAQKELDLKIREYE 71


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +1

Query: 412 SDGNTATTETIAVNGTTPTPKISRADFLNILDRNLKGLA 528
           S  N A   T  V         S  DF  +LDRNL GLA
Sbjct: 112 SKRNLANENTAPVIENLKQQVDSILDFQKLLDRNLSGLA 150


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 216 CLYNAIYLKPNKI*CKTGLSLVPPIYN 136
           C  NAI   PN + CK G  L  P Y+
Sbjct: 371 CPPNAICPSPNYVECKPGYVLYEPWYS 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,461
Number of Sequences: 5004
Number of extensions: 50707
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)