Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12g08
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...   120   2e-28
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    30   0.21 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   3.4  
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    26   4.4  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   5.9  
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    25   5.9  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   5.9  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    25   7.7  

>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score =  120 bits (288), Expect = 2e-28
 Identities = 62/149 (41%), Positives = 85/149 (57%), Gaps = 5/149 (3%)
 Frame = +3

Query: 123 RFSSYFVIFCSVIIFAQSDVPRP---RGVSLSKASLYLPTK--DFTCFDGTATIPFSYVN 287
           +FS ++ +   ++I +   V      RGV+  K+ LY P    ++ C      I F+ VN
Sbjct: 2   KFSQWYTLTAPLLISSLYTVNAANDLRGVASDKSDLYKPDAKGNWKCLGSDKLISFNQVN 61

Query: 288 DDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYANPTAC 467
           DDYCDC DGSDEPGTSAC NG F C N G+    +PS+RV+D VCDCCDG+DE  +   C
Sbjct: 62  DDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVCDCCDGSDE--SLIKC 119

Query: 468 TNICEELGKEARAEAQRVAELHKAGSQLR 554
            N C +  +E  A  +    L K G ++R
Sbjct: 120 PNTCAQKAREYLATLEEHNRLVKNGLKIR 148


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
 Frame = +3

Query: 276 SYVNDDYCDCFDGSD-EPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYA 452
           SY     C    GS  +PG+    +  F C   G R   +P S      CD C GT    
Sbjct: 233 SYSVSSTCSSCHGSGLQPGSHK--STCFACKGTGQRLHFIPPSFHMQTTCDSCGGTGTTI 290

Query: 453 NPTACTNIC 479
            P +    C
Sbjct: 291 PPNSACRSC 299


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -2

Query: 130  ENRSIHVLQTMVIV*LTINEIP 65
            ENRS+ +LQT ++V +T++ IP
Sbjct: 1355 ENRSLTLLQTTLLVLVTVHLIP 1376


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 354 FHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYANPTACT 470
           F C   GH  Q+ P ++ N  +C  C   +   N  AC+
Sbjct: 80  FACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLN--ACS 116


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 288 DDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYAN 455
           DD    F  S      A      + +NAGH  QNL +  V+  V    +G +E +N
Sbjct: 250 DDIASDFFSSPSADLEADDFTTLNNSNAGHLLQNLSNDNVSVSVKALENGNEEVSN 305


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 162 IFAQSDVPRPRGVSLSKASLYLPTKDFTCFDGTATIPFSYVNDDYCDC 305
           +F   D  RP+ + L +AS      DF+  D T    F Y  D   +C
Sbjct: 281 LFISGDCYRPQSIKLIRASGETEVFDFSFDDATG---FFYEQDAVAEC 325


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 197 CIFV*SISLFTDKRFYLF*WNCY 265
           C F   I+ F D+ FY   WNC+
Sbjct: 341 CNFSAEITRFADRNFYDDWWNCW 363


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 168 AQSDVPRPRGVSLSKASLYLPTKDFTCFDGTATIPFSYVNDDY 296
           A++ +P P  VS++   + +PT+D T  DG    P S V  DY
Sbjct: 50  AETILPLPDDVSVT--DILIPTRDGTEIDGRVFTPVS-VPADY 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,117,122
Number of Sequences: 5004
Number of extensions: 43521
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)