Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12g08
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   6.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 402 WNSANSEAGVRHLYNGKHRLYKP 334
           WN  +   GVR L    HRL+KP
Sbjct: 87  WN-VSDYGGVRDLRIPPHRLWKP 108


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = -1

Query: 479 TNVSTGRRISVFICSITAITDSVINPGTRQILRPVSGICTMENTVYT 339
           T +   RR S  IC +  + +SV        +   S   TME    T
Sbjct: 373 TIIDVSRRRSSLICDVYGVNESVSYERGSMTVSVTSKPSTMERQTQT 419


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 468 TNICEELGKEARAEAQRVAELHKAGSQLRIDL 563
           TNI EE+ KEA+   + +  L     Q + D+
Sbjct: 433 TNISEEVLKEAKIIQEEIRTLLDESIQRKSDI 464


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 468 TNICEELGKEARAEAQRVAELHKAGSQLRIDL 563
           TNI EE+ KEA+   + +  L     Q + D+
Sbjct: 139 TNISEEVLKEAKIIQEEIRTLLDESIQRKSDI 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,046
Number of Sequences: 438
Number of extensions: 2931
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)