Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12g04
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0373 - 13194723-13195847,13196219-13196809                       31   0.75 
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424...    28   5.3  
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533...    28   7.0  
01_03_0163 + 13346586-13347809                                         28   7.0  

>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 461 VSEFGGTWFQLRR*WRVETRGVIDFDLRCSAR 366
           V+E G  + QL+R WR + RG++D D R   R
Sbjct: 502 VNEAGQRFLQLQREWRSDARGIVDGDGRFKFR 533


>10_08_0849 +
           21040043-21040199,21040620-21040678,21040925-21042494,
           21042583-21042710,21042793-21043033,21043160-21043710
          Length = 901

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +3

Query: 465 LLQQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPERVD 584
           L+ +L   C ++N+   +LE+++  P +FE +    +R+D
Sbjct: 754 LVLELSELCAEQNLEVWYLEDELISPCMFEELQNQGDRID 793


>07_03_1147 +
           24349811-24350161,24351031-24351366,24353260-24353376,
           24353585-24353647,24354066-24354139,24354216-24354306,
           24354791-24354850,24355270-24355462,24356242-24356522,
           24357435-24357536,24357664-24357774,24358410-24358475,
           24358562-24358660,24358757-24358788,24359171-24359274,
           24359380-24359507,24359625-24359756,24360051-24360359,
           24360887-24361071,24361161-24361263,24361407-24361552,
           24361748-24361827,24361901-24362103
          Length = 1121

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 504 IFSNWLEEKVDLPSIFENISEVPERVDPQPPGSGSSFKSF 623
           +F N+L E+V+ P   +N  +   R+  + P   ++FK+F
Sbjct: 804 LFENFLPEEVESPLCSDNTMKTSNRLLKRDPAFCNTFKAF 843


>01_03_0163 + 13346586-13347809
          Length = 407

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 264 SWAAAIDLLTNDECRLLLEVED 329
           SW AA+D +T DE R LLE  D
Sbjct: 115 SWDAALDGITADEARALLESID 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,504,241
Number of Sequences: 37544
Number of extensions: 315423
Number of successful extensions: 749
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)