Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f19
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    31   0.14 
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    30   0.18 
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    30   0.24 
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    29   0.32 
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    27   1.3  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    27   1.7  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    26   2.9  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   3.9  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    26   3.9  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   5.1  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   5.1  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   5.1  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    25   5.1  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   5.1  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   6.8  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   6.8  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   6.8  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   9.0  
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy...    25   9.0  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    25   9.0  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +3

Query: 246 DDNIENLLSEYYKYLERAHKQQRAYENYK 332
           DDN   LL+ Y K +ERAHK     ENYK
Sbjct: 760 DDNA--LLAAYSKVVERAHKADTWLENYK 786


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -1

Query: 219 HPLVHSR-YFLIHSLCLLC-H*KLWYRKMDLFRCH-SLLNY 106
           HPL  S+ Y L+ S CL C H KL   K+ LF C   LL+Y
Sbjct: 88  HPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRLKLLDY 128


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 168 IADIMNELENNVNVPADVSRDNES-EGDDNIENLLSEY 278
           + D   E++ N+   A + +D+ES EG+ ++EN LSEY
Sbjct: 465 VVDSELEVDENLLEDATMIQDDESHEGESHLENSLSEY 502


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = +3

Query: 72  AVLAGICKCESDSLEVNDIETSPFYDTIIFSDIADIMNELENNVNVPADVSRDNESEGDD 251
           A++  +  CE D   + D  + P  +TI      +  N   N + +PA++      E D+
Sbjct: 68  AIIQLLTSCEGDHWLMPDWSSMPDDETITEDSEEETFNGNANEITIPANIHIPIIEESDN 127

Query: 252 NIENLLSEYYK 284
              N L   +K
Sbjct: 128 ASNNKLCTLFK 138


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
 Frame = +3

Query: 192 ENNVNVPADVSRDNESEGDDNIENLLSEYYKYLERAHKQQ-------RAYENYKSKNEIA 350
           + +V+     S D ES+ +D  + LL E     +   ++Q       RA E  K + EIA
Sbjct: 146 QESVDSSNSESSDEESDSEDETQQLLRELENIKQERKREQMLQEEKNRALEQEKREREIA 205

Query: 351 FVPQQRQVKAKASVKSGAYSSNYDHPKYYR 440
           F     ++  KAS  S      +D    +R
Sbjct: 206 F---GNELLNKASSGSFQVKRRWDEDVVFR 232


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 165 DIADIMNELENNVNVPADVSRDNESEGDDNIENLLSEYYK 284
           D+    ++ +NN NV  D + ++  EG++  E+   E +K
Sbjct: 32  DVLSSSSDEDNNENVGQDYAEESGGEGNEKSEDEFEEKFK 71


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 263 VLNVIVSFTLIISANIRWYIHVIF*FIHYVCYVTKNYGIVKWTCF 129
           ++ +++SFT II  N          ++ Y     KNYG V+WT F
Sbjct: 74  LIKLLISFTSIILFNAPAVC-----YLKYKDAFFKNYGAVEWTLF 113


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/44 (22%), Positives = 25/44 (56%)
 Frame = +3

Query: 156 IFSDIADIMNELENNVNVPADVSRDNESEGDDNIENLLSEYYKY 287
           +++D+A+ ++E  N       +++ N+  G+D  +NL+    K+
Sbjct: 693 VYNDLAESLHEQLNAYIQRKKINKKNQLNGNDETQNLVLALNKF 736


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 171 ADIMNELENNVNVPADVSRDNESEGDDNIENLLSEYYKYLERAHKQQRAYE 323
           AD+ +E   ++ +PA+V R+ E + D +    L +  K  ++  K+    E
Sbjct: 455 ADLDDEDPESMGIPANVDREVEDQDDLDYYESLDKKSKMAKKLRKENHDLE 505


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +3

Query: 420 DHPKYYRYPYSQHGSFSLF-WPSNQNGNY 503
           D P   +YP+S     S F W SN N ++
Sbjct: 174 DVPSKKKYPHSMDAEISKFKWDSNNNNDW 202


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 7/31 (22%), Positives = 19/31 (61%)
 Frame = +3

Query: 168 IADIMNELENNVNVPADVSRDNESEGDDNIE 260
           + ++++E E N+++  D+S    +  DD ++
Sbjct: 876 VTELIDEAEENIDISQDISMTETNAVDDEVQ 906


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 22/89 (24%), Positives = 37/89 (41%)
 Frame = +3

Query: 159  FSDIADIMNELENNVNVPADVSRDNESEGDDNIENLLSEYYKYLERAHKQQRAYENYKSK 338
            + D++D+  +L N+     ++   NE   DD  E       K  ++AH  Q      K  
Sbjct: 1611 YCDMSDLQRKLLNDFVSQLNI---NEELEDDETEKTQGTRKKKSQKAHIFQALQYMRKLC 1667

Query: 339  NEIAFVPQQRQVKAKASVKSGAYSSNYDH 425
            N  A +  ++  K  A VK  A  ++  H
Sbjct: 1668 NHPALILTEKHPKRNAIVKQLAKENSGLH 1696


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 263 VLNVIVSFTLIISANIRWYIHVIF*FIHYVCYVTKNYGIVKWTCF 129
           ++ +++SFT I   N+     +   ++ Y     KNYG  +WT F
Sbjct: 74  LIKLLISFTPIYVLNV-----LAICYLKYKDAFFKNYGAAEWTLF 113


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 162 SDIADIMNELENNVNVPADVSRDNESEGDDNI-ENLLSE 275
           SD  DI N L+     P D++ DN+ +  +N+ EN+  E
Sbjct: 7   SDEVDISNSLKA---FPVDIATDNQKDKHENVGENVSDE 42


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 261 NLLSEYYKYLERAHKQQRAYENYKSK 338
           +LL+ Y+KY E +HK     + Y  K
Sbjct: 342 DLLARYWKYFEESHKFDLNLQVYHEK 367


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 168 IADIMNELENNVNVPADVSRDNESEGDDNIENLLSEYYKYLERAHKQQRAYENYKSKNEI 347
           ++DI+++  + +NV   VS  + +   D I  LLS     L    KQ+R Y  + S  + 
Sbjct: 69  LSDILHDNSSPLNVSTSVSSSSNNTAVDEIIKLLSLISFDLA---KQKRTYLIFSSSGKP 125

Query: 348 AF 353
            F
Sbjct: 126 VF 127


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 130 SMSFTSKLSDSHLHIPASTAL 68
           S +F+S+  DS+ H P+ST L
Sbjct: 22  SHTFSSQTDDSYFHKPSSTGL 42


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 94  LHIPASTALTKNIRSLXTLAWPINEI 17
           L IP S ++ +N+R++  LA   NEI
Sbjct: 435 LEIPGSQSIVENMRAVINLAKLTNEI 460


>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 174 DIMNELENNVNVPADVS-RDNESEGDDNIE 260
           +++N +++ +   AD + ++NESEG D +E
Sbjct: 42  EMINTIKSPIIETADTADQENESEGSDEVE 71


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 263 VLNVIVSFTLIISANIRWYIHVIF*FIHYVCYVTKNYGIVKWTCF 129
           ++ +++SFT II  N          ++ Y     KNYG  +WT F
Sbjct: 74  LIKLLISFTSIILFNAPAVC-----YLKYKDAFFKNYGAAEWTLF 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,934
Number of Sequences: 5004
Number of extensions: 36382
Number of successful extensions: 158
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)