Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f18
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    29   0.81 
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    28   1.4  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    25   9.9  

>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 541 ETDEPMSHKRKREDDD 588
           + + PMS KRKREDDD
Sbjct: 364 DNNTPMSEKRKREDDD 379


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 134 VIISDILVHFVKVSPCCDVSASEATHLTIGLISENTY 244
           +I +++L+H  K SP  DV     T LTI  I  N +
Sbjct: 456 IIFTNLLMHLEKTSPNSDVDGVSMTILTICKILLNNF 492


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 300 QESDHKNYDNPFPVHKNGHHIQSTSTD 380
           +E D +N + P   + N H IQS  T+
Sbjct: 129 KEDDLQNVNEPQDAYSNDHDIQSKDTE 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,232
Number of Sequences: 5004
Number of extensions: 43098
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)