Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12f17
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 167 5e-42
01_07_0230 + 42170382-42170408,42170532-42170648,42171930-421721... 148 3e-36
05_04_0161 + 18635635-18635788,18637117-18637295,18638032-186381... 127 5e-30
12_02_0205 - 15506167-15507576 31 0.76
03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072... 28 4.0
11_01_0570 - 4529901-4529962,4530725-4530800,4531247-4531306,453... 27 9.3
08_02_1549 - 27808389-27808524,27809274-27809384,27811248-27811720 27 9.3
>11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 167 bits (406), Expect = 5e-42
Identities = 83/157 (52%), Positives = 110/157 (70%), Gaps = 5/157 (3%)
Frame = +1
Query: 46 NSFFQQSVPPVMAFHLGSLGFLTPFEFNNFQEQVMNVLEGHAAL----TLRSRLQCVVLR 213
++ F+ SVPPV++F+LGSLGFLT F F++ + V+ G+ L TLR RL+C + R
Sbjct: 1505 SNLFRTSVPPVVSFNLGSLGFLTSHNFEGFRQDLRAVIHGNNTLGVYITLRMRLRCEIFR 1564
Query: 214 KSQDDNKDKKKPTTIL-VLNEVVVDRGPSPYLSNIDLFLDGKHITSVQGDGLIVSTPTGS 390
K P + VLNEVVVDRG +PYLS I+ + IT VQGDG+IV+TPTGS
Sbjct: 1565 NG------KAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHNHLITKVQGDGVIVATPTGS 1618
Query: 391 TAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVP 501
TAY+ AAG SM+HP+VP ++ TPICPHSLSFRP+++P
Sbjct: 1619 TAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILP 1655
>01_07_0230 +
42170382-42170408,42170532-42170648,42171930-42172119,
42172250-42172369,42172448-42172740,42172872-42172966,
42173075-42173181,42173514-42173602,42173809-42173895,
42174053-42174077,42174659-42174966,42175352-42175657
Length = 587
Score = 148 bits (358), Expect = 3e-36
Identities = 67/123 (54%), Positives = 94/123 (76%)
Frame = +1
Query: 133 FQEQVMNVLEGHAALTLRSRLQCVVLRKSQDDNKDKKKPTTILVLNEVVVDRGPSPYLSN 312
+++ + NVL G ++TLR+RLQC V+R + D + ++P ILVLNEV +DRG S YL+
Sbjct: 388 YRDCLDNVLNGPFSITLRNRLQCHVIRDAAKDELETEEP--ILVLNEVTIDRGISSYLTY 445
Query: 313 IDLFLDGKHITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPI 492
++ + D +T VQGDGLI+ST +GSTAY++AAG SM+HP VP I+ TPICPHSLSFRP+
Sbjct: 446 LECYCDSSFVTCVQGDGLIISTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPL 505
Query: 493 VVP 501
++P
Sbjct: 506 ILP 508
>05_04_0161 +
18635635-18635788,18637117-18637295,18638032-18638145,
18638274-18638368,18638604-18638710,18639455-18639528,
18641170-18641400,18641892-18642197
Length = 419
Score = 127 bits (307), Expect = 5e-30
Identities = 58/103 (56%), Positives = 77/103 (74%)
Frame = +1
Query: 193 LQCVVLRKSQDDNKDKKKPTTILVLNEVVVDRGPSPYLSNIDLFLDGKHITSVQGDGLIV 372
L C V+ S + D ++P ILVLNEV +DRG S YL+ ++ + D +T VQGDGLI+
Sbjct: 240 LWCHVIYDSAKNEVDTEEP--ILVLNEVTIDRGMSSYLTYLECYCDSSFVTRVQGDGLII 297
Query: 373 STPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVP 501
ST +GSTAY++AAG SM+HP VP I+ TPICPHSLSFRP+++P
Sbjct: 298 STTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILP 340
>12_02_0205 - 15506167-15507576
Length = 469
Score = 30.7 bits (66), Expect = 0.76
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 419 LAPAATAYAVLPVGVDTISPSPCTDVMCFP 330
L P ATA+ P G T SP PC+ MC P
Sbjct: 127 LPPPATAFR--PNGSATFSPLPCSSDMCLP 154
>03_05_0466 -
24602715-24603964,24605762-24605944,24606381-24607286,
24609446-24609516,24609737-24609846,24610073-24610108,
24610211-24610278,24610655-24610760,24610850-24610997,
24611091-24611218,24611319-24611454,24611924-24612072
Length = 1096
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 349 VQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRP 489
++ ++ TG + A+ +IHPS P P+C HSLS P
Sbjct: 1 MESSSSVIFLGTGCSG-ALPDARCLIHPSTPPC---PVCSHSLSLPP 43
>11_01_0570 -
4529901-4529962,4530725-4530800,4531247-4531306,
4533797-4533959,4534037-4534091,4534314-4534366,
4534881-4534980,4535556-4535703,4535964-4536056
Length = 269
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 211 RKSQDDNKDKKKPTTILVLNEVVVDRGPSPYLSNIDLFLDGKHITSVQGDG 363
RK + K T L + + G PYL I+ + IT V+GDG
Sbjct: 179 RKRLTGPRQKGGKETGFPLQLMHLKEGSDPYLPKIECYEHNHLITKVEGDG 229
>08_02_1549 - 27808389-27808524,27809274-27809384,27811248-27811720
Length = 239
Score = 27.1 bits (57), Expect = 9.3
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 304 NTAMVLGPRQPRSAPV*WSASSCLYC--RLDSSEALRIVNGTLKLEPRVLLKRS 149
+TA P P +A A SC YC R SS+AL KLE R L KRS
Sbjct: 39 HTAATRNPAPPLAAAGDDRAFSCTYCRRRFYSSQALGGHQNAHKLE-RSLAKRS 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,339,780
Number of Sequences: 37544
Number of extensions: 258881
Number of successful extensions: 794
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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