Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f17
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-12|AAF36072.2|  370|Caenorhabditis elegans Hypothetical...    43   1e-04
AL023828-26|CAA19455.2|  431|Caenorhabditis elegans Hypothetical...    29   1.6  
AL023828-12|CAA19456.1|  492|Caenorhabditis elegans Hypothetical...    29   1.6  
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z50857-2|CAA90718.1|  219|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z82258-1|CAB05122.2|  906|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AC024214-12|AAF36072.2|  370|Caenorhabditis elegans Hypothetical
           protein Y77E11A.2 protein.
          Length = 370

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
 Frame = +1

Query: 91  LGSLGFLTPFEFNNFQEQVMNVLEGHAALTLRSRLQCVVLRKSQDD--NKDKKKPTTILV 264
           +GS G L     N  ++ +  ++ G+     R+R++ V +++S++   +  + + +T L 
Sbjct: 147 IGSEGHLCVGGKNPPRDLIERLVSGNLKWVQRTRIR-VTVKESRNSIFSLKRSEKSTNLA 205

Query: 265 LNEVVVDRGPSPYLSNIDLFLDGKHITSVQGDGLIVSTPTGSTAY 399
           LNEV +    +  +S  ++ +D       +  GLIVST TGST++
Sbjct: 206 LNEVFIGEDEAAKVSTYNISIDDSQTVKQKSSGLIVSTGTGSTSW 250


>AL023828-26|CAA19455.2|  431|Caenorhabditis elegans Hypothetical
           protein Y17G7B.10a protein.
          Length = 431

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 256 ILVLNEVVVDRGPSPYLSNIDLFLDGKHITSVQGDGLIVSTPTGSTAY 399
           +L LNEV +    S  +S  ++ ++   +   +  G+ + T TGST++
Sbjct: 260 VLALNEVFIGESLSSRVSYYEIGINDAQMLKQKSSGITICTGTGSTSW 307


>AL023828-12|CAA19456.1|  492|Caenorhabditis elegans Hypothetical
           protein Y17G7B.10b protein.
          Length = 492

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 256 ILVLNEVVVDRGPSPYLSNIDLFLDGKHITSVQGDGLIVSTPTGSTAY 399
           +L LNEV +    S  +S  ++ ++   +   +  G+ + T TGST++
Sbjct: 321 VLALNEVFIGESLSSRVSYYEIGINDAQMLKQKSSGITICTGTGSTSW 368


>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical protein
            E03G2.2 protein.
          Length = 1503

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 187  SRLQCVVLRKSQDDNKDKKKPTTILVLNEVVVDR-GPSPYL 306
            SRL  +  +KS+    +KKKP  ++   E  + R  P  YL
Sbjct: 892  SRLSKISRKKSKSSIVEKKKPDALITKEEAAIGRVNPGVYL 932


>Z50857-2|CAA90718.1|  219|Caenorhabditis elegans Hypothetical
           protein F11A1.2 protein.
          Length = 219

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 134 KLLNSKGVRKPNEPKWNAITGG 69
           K  +SK VRK NE KW   T G
Sbjct: 16  KKQSSKAVRKKNEKKWGKTTDG 37


>Z82258-1|CAB05122.2|  906|Caenorhabditis elegans Hypothetical
           protein C27H2.2a protein.
          Length = 906

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 67  VPPVMAF-HLGSLGFLTPFEFNNFQEQVMNVLEGHAALTLRSRLQCVVLRKSQDDNKDKK 243
           VPP+ +  HLG L     F  +   EQ +    GH    L S   C++    +DDN D +
Sbjct: 802 VPPLESLKHLGVLLARGDFRISMIVEQYLRNANGHLLSDLLSSYLCLL----EDDNTDAR 857


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,799,327
Number of Sequences: 27780
Number of extensions: 201611
Number of successful extensions: 525
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)