Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f17
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.48 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   3.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 94   GSLGFLTPFEFNNFQEQVMNVLEGHAALTL 183
            G +GF+TPFE  +F   + + L  +A L +
Sbjct: 978  GRVGFVTPFEHRHFISGIDSNLHVYAPLKI 1007


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 196 QCVVLRKSQDDNKDKKKPTT 255
           QC V RK +   K+K KP +
Sbjct: 262 QCAVKRKEEKAQKEKDKPNS 281


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = +2

Query: 8   FNYDVMNWSLNEIIHSFSNQCRR 76
           +NY+  N++ N   ++++N C++
Sbjct: 331 YNYNNNNYNNNNYNNNYNNNCKK 353


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 253 TILVLNEVVVDRGPSPYLSNIDLFLDG 333
           ++++LN+ + +   SP L+N  LF+ G
Sbjct: 11  SLIILNDEIYNIIASPQLNNPTLFMIG 37


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +3

Query: 48   FILSAISAAGDGVPLGLVGFSDALRVQQLSGASHERFRRTRGSNFKVP 191
            F ++A +  G+G    +V  + ++RV     +  ++F  T   + K+P
Sbjct: 1250 FWVTASTNIGEGEASKIVALAPSVRVPAKIASFDDKFTATYKEDVKLP 1297


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 208 LRKSQDDNKDKKKPTTILVLN 270
           + K +D    KKK  TIL +N
Sbjct: 65  ISKRKDKEHKKKKSKTILAVN 85


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 208 LRKSQDDNKDKKKPTTILVLN 270
           + K +D    KKK  TIL +N
Sbjct: 65  ISKRKDKEHKKKKSKTILAVN 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,485
Number of Sequences: 438
Number of extensions: 2722
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)