Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12f16
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0577 - 10862976-10863215,10863653-10863788,10863906-108640... 153 9e-38
09_02_0576 - 10853361-10853600,10854033-10854168,10854285-108544... 153 9e-38
03_02_0140 + 5864612-5864955,5865154-5865381,5865460-5865814,586... 153 9e-38
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 118 3e-27
09_04_0704 + 19623046-19623386,19623583-19623792,19623872-196242... 68 5e-12
12_02_1184 + 26785739-26786113 65 2e-11
12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388 64 4e-11
12_02_1195 + 26906814-26907121,26907771-26907992,26908913-269091... 62 2e-10
12_02_1183 - 26764883-26765174,26765559-26765677 62 2e-10
02_01_0240 - 1593186-1593323,1593380-1593406 31 0.64
11_04_0099 + 13461311-13461612,13461685-13461800,13463296-13463408 28 3.4
12_01_0384 + 3012359-3012404,3012641-3012825,3013014-3013045,301... 28 4.5
12_01_0250 - 1852619-1854124,1855224-1856153,1856293-1856409,185... 28 4.5
07_01_0099 + 741931-743835 27 7.8
04_01_0124 - 1289034-1289087,1289181-1289283,1290943-1291106 27 7.8
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 27 7.8
>09_02_0577 -
10862976-10863215,10863653-10863788,10863906-10864030,
10864132-10864516,10864571-10864798,10864976-10865319
Length = 485
Score = 153 bits (370), Expect = 9e-38
Identities = 67/107 (62%), Positives = 90/107 (84%)
Frame = +2
Query: 140 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADP 319
G + L +++PF + LPE+ +RKI FREKV++T I+LFIFLVC Q+PL+GI S+ ADP
Sbjct: 4 GFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
Query: 320 FYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKD 460
FYW+RVILASNRGT+MELGI+PIVTSG++MQLL G+KIIEV ++ ++
Sbjct: 64 FYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKIIEVDNSVRE 110
>09_02_0576 -
10853361-10853600,10854033-10854168,10854285-10854409,
10854487-10854871,10854934-10855161,10855332-10855675
Length = 485
Score = 153 bits (370), Expect = 9e-38
Identities = 67/107 (62%), Positives = 90/107 (84%)
Frame = +2
Query: 140 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADP 319
G + L +++PF + LPE+ +RKI FREKV++T I+LFIFLVC Q+PL+GI S+ ADP
Sbjct: 4 GFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
Query: 320 FYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKD 460
FYW+RVILASNRGT+MELGI+PIVTSG++MQLL G+KIIEV ++ ++
Sbjct: 64 FYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKIIEVDNSVRE 110
>03_02_0140 +
5864612-5864955,5865154-5865381,5865460-5865814,
5865899-5866023,5866150-5866285,5866382-5866621
Length = 475
Score = 153 bits (370), Expect = 9e-38
Identities = 67/107 (62%), Positives = 90/107 (84%)
Frame = +2
Query: 140 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADP 319
G + L +++PF + LPE+ +RKI FREKV++T I+LFIFLVC Q+PL+GI S+ ADP
Sbjct: 4 GFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
Query: 320 FYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKD 460
FYW+RVILASNRGT+MELGI+PIVTSG++MQLL G+KIIEV ++ ++
Sbjct: 64 FYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKIIEVDNSVRE 110
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 118 bits (283), Expect = 3e-27
Identities = 52/115 (45%), Positives = 80/115 (69%), Gaps = 6/115 (5%)
Frame = +2
Query: 146 KFLEVIKPFCSILPEIAKPE-RKIQFREKVLWTAITLFIFLVCCQIPLFGI----MSSDS 310
+ L++++PF +LPE+ +P+ R++ FR K+ TA LF FL C Q+PL+G+ +
Sbjct: 10 RLLDLVRPFMPLLPEVREPDGRRVPFRRKLACTAAALFAFLACSQLPLYGLHRAAAAGGG 69
Query: 311 ADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDKGFV 472
ADPFYW+R ILASNRGT+MELGI+P+VT+G ++QLL G+ ++ P D+ +
Sbjct: 70 ADPFYWVRAILASNRGTVMELGITPVVTAGTLVQLLVGSNLVRADSSNPDDRALL 124
>09_04_0704 +
19623046-19623386,19623583-19623792,19623872-19624223,
19624320-19624444,19624578-19624668,19624817-19625050
Length = 450
Score = 67.7 bits (158), Expect = 5e-12
Identities = 34/100 (34%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Frame = +2
Query: 176 SILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSD---SADPFYWIRVILA 346
+++PE+ P++ I R+K +TAI LFIF+ Q+ L+GI DP +W+ +ILA
Sbjct: 12 ALVPEVQCPDQPISPRQKFKYTAIVLFIFVTASQVLLYGIQHQPRTIEPDPLHWLHLILA 71
Query: 347 SNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDKG 466
S+R TL+ GI I+ +++++ KII + + + G
Sbjct: 72 SSRSTLLSHGIVAILVPEVLVKIWVYLKIITLDTSAPETG 111
>12_02_1184 + 26785739-26786113
Length = 124
Score = 65.3 bits (152), Expect = 2e-11
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Frame = +2
Query: 212 IQFREKVLWTAITLFIFLVCCQIPLFGIMS---SDSADPFYWIRVILASNRGTLMELGIS 382
+ FR KVL+TA++L +FLV ++ L+G+ + DP YW+ + AS R T+M LG+
Sbjct: 33 VSFRRKVLYTAVSLLVFLVAGELLLYGVQNYYGGGEHDPRYWMNAMSASLRPTVMALGLV 92
Query: 383 PIVTSGLIMQLLAGAKIIEVGD 448
P++ S +++ L KII V D
Sbjct: 93 PLLYSEMVVHLCMALKIIGVHD 114
>12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388
Length = 483
Score = 64.5 bits (150), Expect = 4e-11
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Frame = +2
Query: 140 GIKFLEVIKPFCSILPEIAKP-ERKIQFREKVLWTAI-TLFIFLVCCQIPLFGIMSSDSA 313
G +++P + P + + E + FR +V TA +L + L +PL+
Sbjct: 13 GTALWRLLRPLAVLGPRMQRRREAAVPFRGQVRNTAAASLLLLLSLSHVPLYAGAGDADP 72
Query: 314 DPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLA 421
DP +W R +LA+ RGT+MELG++P+VTS ++++LLA
Sbjct: 73 DPLFWARPLLAAPRGTVMELGVAPVVTSWVVVRLLA 108
>12_02_1195 +
26906814-26907121,26907771-26907992,26908913-26909153,
26909512-26909642,26910336-26910474,26910600-26910810,
26911371-26911759
Length = 546
Score = 62.5 bits (145), Expect = 2e-10
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Frame = +2
Query: 212 IQFREKVLWTAITLFIFLVCCQIPLFGIMS----SDSADPFYWIRVILASNRGTLMELGI 379
+ FR K +TA +L +FLV Q+PL+G+ D DP YW+ + AS+ TLM LGI
Sbjct: 15 VSFRRKAAYTAASLLVFLVAGQLPLYGVKKYNGDKDVPDPLYWMNCMFASSNNTLMTLGI 74
Query: 380 SPIVTSGLIMQLLA 421
P++ S + +++ +
Sbjct: 75 IPLLLSEMAVRIFS 88
>12_02_1183 - 26764883-26765174,26765559-26765677
Length = 136
Score = 62.5 bits (145), Expect = 2e-10
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Frame = +2
Query: 212 IQFREKVLWTAITLFIFLVCCQIPLFGIMS----SDSADPFYWIRVILASNRGTLMELGI 379
+ FR K +TA +L +FLV Q+PL+G+ D DP YW+ + AS+ TLM LGI
Sbjct: 48 VSFRRKAAYTAASLLVFLVAGQLPLYGVKKYNGDKDVPDPLYWMNCMFASSNNTLMTLGI 107
Query: 380 SPIVTSGLIMQLLA 421
P++ S + +++ +
Sbjct: 108 IPLLLSEMAVRIFS 121
>02_01_0240 - 1593186-1593323,1593380-1593406
Length = 54
Score = 30.7 bits (66), Expect = 0.64
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 268 MLPDSLIWYNVIRQCRSLLLDPCNSCIKQRDI 363
++ D L+W + R C+S ++P C R I
Sbjct: 15 LISDGLLWLAIARCCKSTCMEPIQGCFLSRQI 46
>11_04_0099 + 13461311-13461612,13461685-13461800,13463296-13463408
Length = 176
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 308 SADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDKGFV 472
S DP Y + AS R + G+SP+ + ++ LA + + D D G+V
Sbjct: 88 SKDPIYSDKQFRASRRDAINRQGLSPLQKCTIAIRALACGTLGDAIDEYVDTGYV 142
>12_01_0384 +
3012359-3012404,3012641-3012825,3013014-3013045,
3013387-3013514,3013695-3013940,3014200-3014284,
3014369-3014387,3014563-3014667
Length = 281
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 123 RNKSKWE*NFWK*LSRSAVYCQK*RN--QNVRFNSERKYYGQQS 248
RN +WE + W+ S ++Y Q+ + F S+ K+YG S
Sbjct: 66 RNVQEWEEDVWRSSSVLSIYHQRGTRGYKQAAFKSKDKFYGSSS 109
>12_01_0250 -
1852619-1854124,1855224-1856153,1856293-1856409,
1856777-1857157
Length = 977
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -3
Query: 237 HNTFSRN*ILRSGFAISGNILQNGLITSKNFIPILIYCDLTILTKI 100
HN F N L +GF + + KNF+ I + +L + K+
Sbjct: 99 HNFFKLNPYLSTGFVTINRAIMEAMEDEKNFLEIKVKSNLCSILKL 144
>07_01_0099 + 741931-743835
Length = 634
Score = 27.1 bits (57), Expect = 7.8
Identities = 7/28 (25%), Positives = 20/28 (71%)
Frame = +1
Query: 232 IMDSNHIIYFLSMLPDSLIWYNVIRQCR 315
I ++ H++ +++ PD+++W +++ CR
Sbjct: 415 IEEAFHLVQSMTIAPDTVMWVSLLAACR 442
>04_01_0124 - 1289034-1289087,1289181-1289283,1290943-1291106
Length = 106
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 304 RQCRSLLLDPCNSCIKQRDINGAWYLTYCNIRT 402
R SLLL C C++ + N A+ L ++RT
Sbjct: 47 RDSGSLLLRICEQCLQHHNYNNAYTLHAIDVRT 79
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 27.1 bits (57), Expect = 7.8
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = -3
Query: 435 MILAPASNCMISP-DVTIGEIPSSINVPLFDARITRIQ*KGSALSDDII 292
M LA NC+ P ++ E + INV L A I+R++ +G +LS D++
Sbjct: 1039 MELAKLFNCVPIPVKESLDEPSAKINV-LLQAYISRLELEGLSLSSDMV 1086
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,329,457
Number of Sequences: 37544
Number of extensions: 206322
Number of successful extensions: 546
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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