Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f16
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          27   0.078
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      27   0.078
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.0  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   9.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.0  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 0.078
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 232 YFLSELNLTFWFRYFWQYTAERLNYFQK--FYSHF-DLLRFNYP 110
           Y+L   N T W+        +RLNYF +    +HF  +L  NYP
Sbjct: 197 YYLLAANYTGWYLTKHNVPEQRLNYFTEDVGLNHFYFMLNHNYP 240


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 0.078
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 232 YFLSELNLTFWFRYFWQYTAERLNYFQK--FYSHF-DLLRFNYP 110
           Y+L   N T W+        +RLNYF +    +HF  +L  NYP
Sbjct: 197 YYLLAANYTGWYLTKHNVPEQRLNYFTEDVGLNHFYFMLNHNYP 240


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 226 LSELNLTFWFRYFW 185
           L +  L F+FR FW
Sbjct: 54  LMDFTLDFYFRQFW 67


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 77  TIQLLFINNTPIGL 36
           +++LLFINN  I L
Sbjct: 618 SVELLFINNNYINL 631


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 334 CNSCIKQRDINGAWYLTYCN 393
           C +CI     +  ++L YCN
Sbjct: 35  CRNCIHPTVFSVLFWLGYCN 54


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 334 CNSCIKQRDINGAWYLTYCN 393
           C +CI     +  ++L YCN
Sbjct: 483 CRNCIHPTVFSVLFWLGYCN 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,981
Number of Sequences: 438
Number of extensions: 2823
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)