Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f15
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    30   0.29 
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    27   1.6  

>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = +3

Query: 78  SSLYSPDYNEGTQSFAVFFVSGTVTQDKNFKSWA*KCVSETFGAK*EKISATTHIRL 248
           SSL  PD NEG + F    + G VTQ K F  WA K +S++  A+  K  + +  R+
Sbjct: 47  SSLLLPDENEGNEVFG--SLKGLVTQSK-FGQWANK-LSKSLQARRRKSESISKPRV 99


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 43  KLLMEYLC*FKSRRYTHRITMRVHKVL 123
           KL   YLC FK + + + +  ++HK+L
Sbjct: 151 KLFTYYLCKFKDQEHIYTLIFKLHKLL 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,895
Number of Sequences: 5004
Number of extensions: 51768
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)