Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f15
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf (diva...    31   0.82 
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z54327-8|CAA91121.2|  451|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 2 protein.
          Length = 465

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 514 KLPNDLSVVLTFSVPKKIMTNFHKSRPSSFFCFV 413
           +LP  L  ++TF+  K+IM NF  S+P  +F  +
Sbjct: 343 QLPFALIPMITFTSSKRIMHNFRTSKPLQYFSII 376


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical protein
            F01G4.3 protein.
          Length = 1266

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +1

Query: 295  QYLKTKIPRISDAKLKEEIFVDQQILT*ANER*KF*FEVERSRKKSLGGFCESL 456
            +Y  T+IPR  D +L E +    Q +T A    K   E+E    K LG FC++L
Sbjct: 958  EYNMTQIPRFRDRELSENVKKLLQQITTAVPGLKS-GEIETYTWKELGSFCQNL 1010


>Z54327-8|CAA91121.2|  451|Caenorhabditis elegans Hypothetical
           protein C26D10.3 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 178 LKNVSQKPLVPSEK-KFLPPLT*GWDSRKTISKININE*FQYLKTKIPRISDAKLKEEIF 354
           +K  +   L P  + +FL      WDS K    +  NE  +Y K  I   S  K ++E+ 
Sbjct: 57  VKETNCHELFPDSRIRFLNDTVVTWDSSKNEIHLQNNEKLKYDKLCIATGSRPKFQKELG 116

Query: 355 VDQQIL 372
           +D++I+
Sbjct: 117 IDRRIV 122


>AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical
           protein Y2H9A.2 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = -3

Query: 432 ALFSASFNFELKFSSFISSRKYLLIYKNFFLQFCVTDSRNFGF*ILKLFIDI 277
           AL   SFN  L + +   S K +  Y    + F VTD   F    L LFI I
Sbjct: 13  ALLGCSFNLMLIYMAIYKSPKTIRSYATLIINFAVTD---FFECALDLFIQI 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,151,040
Number of Sequences: 27780
Number of extensions: 276298
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)