Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f13
         (540 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   5.0  
AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein prot...    23   6.5  
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      23   8.7  
AF457560-1|AAL68790.1|   56|Anopheles gambiae hypothetical prote...    23   8.7  

>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 423 RWSILKIIKFTLGTLLRSAVGKPLLCRP 340
           RW I+ I  ++    +R AVG+ LL RP
Sbjct: 191 RWRIISIYSYSNHVYIRFAVGE-LLQRP 217


>AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein
           protein.
          Length = 385

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 407 LRIDHLQWVKINEVY 451
           L +DH +W K NE Y
Sbjct: 314 LLLDHFKWEKENEYY 328


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 295 CPSNLNRTTCIDRP 254
           CP NL   TC  RP
Sbjct: 80  CPGNLQNGTCETRP 93


>AF457560-1|AAL68790.1|   56|Anopheles gambiae hypothetical protein
           13 protein.
          Length = 56

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 174 QDNAIVQFKIKKHTPLRKLM 233
           Q N I+Q  +K+  PLR+L+
Sbjct: 21  QGNEIIQNVVKRSIPLRQLI 40


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 520,286
Number of Sequences: 2352
Number of extensions: 9421
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 50320221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)