Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f11
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   1.8  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   2.4  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.2  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    24   9.7  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    24   9.7  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    24   9.7  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    24   9.7  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 439 RPRRINRAYPISPAVSKTSICFHTRRP 359
           RP    + YP +PAV   S+ FH   P
Sbjct: 72  RPVEAFKTYPSTPAVPSKSVLFHFYEP 98


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 357 DQADNDFNNIFNYIGNTINT 298
           D+A NDFN   +++ N +NT
Sbjct: 170 DEAQNDFNGAKDHLSNGVNT 189


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 433 RRINRAYPISPAVSKT 386
           +R+N+AYP  PA  KT
Sbjct: 294 KRVNQAYPFLPATGKT 309


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 297 EYLSYYRYN*KCY*NHYLPGP 359
           E LS+ R N KC  N ++P P
Sbjct: 230 EILSFLRCNAKCVQNSFVPDP 250


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 205 DPNCNESDARRQTHRSSAIICFCD 276
           DP    SDA R+  R +AII F +
Sbjct: 234 DPEGGVSDATREAERKNAIIPFTE 257


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 87  RAPSRVPVIITKNFNRKYVY 28
           +A ++VP ++ KN  R+YVY
Sbjct: 344 KAIAKVPEVVEKNAWRRYVY 363


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 199 LGDPNCNESDARRQTHRSSAIICFCDTY 282
           L +P+  ESD    T + S  +  C+TY
Sbjct: 142 LKEPSNQESDTLSLTEKFSRFMSLCETY 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,847
Number of Sequences: 5004
Number of extensions: 37368
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)