Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f11
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1186 + 26791153-26791666,26791906-26792025,26792303-26792409     29   2.4  
01_05_0754 + 24933860-24934031,24936035-24936104,24936192-249363...    28   4.2  
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565...    27   5.5  
03_01_0567 + 4186620-4186694,4186766-4186852,4187293-4187932,418...    27   7.3  
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779...    27   9.6  
01_01_0034 - 269356-270333,270809-270897,273621-273957                 27   9.6  

>12_02_1186 + 26791153-26791666,26791906-26792025,26792303-26792409
          Length = 246

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 97  MERNGTSQDDSCPILCLTKTALFVLISLFV 186
           MER G   DD     CLT T LF L+S+ V
Sbjct: 93  MERGGGDDDDVFSSTCLT-TVLFTLLSIIV 121


>01_05_0754 +
           24933860-24934031,24936035-24936104,24936192-24936316,
           24936539-24936677,24936926-24937022,24937105-24937170,
           24937478-24937616,24938149-24938258,24938355-24938459,
           24938579-24938686
          Length = 376

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 1   ESKFLCDSGINVFAIKIFSDYDRDPRRSTY-FVMERNGT 114
           E K   D+ +N F   I+SD D D RR+     +E NGT
Sbjct: 309 EEKLEGDAALNKFFRDIYSDADEDMRRAMMKSFVESNGT 347


>03_05_1149 +
           30753463-30754695,30754834-30755017,30755321-30756549,
           30756702-30756816,30757126-30758084
          Length = 1239

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = -3

Query: 307 DKYSLGSIRMYHKNILLLNSYAFVGERLIRCNS--DHRGAGTTQ--ITKSAQTTQFWSNT 140
           D   + SI  Y     + +  +   ERL+R ++  DH G       + +  +  + +SN 
Sbjct: 26  DYKDVDSIAFYQVPTNVGSGMSMESERLVRVHACTDHNGVSFLHKLLHRLLEHKEMYSNV 85

Query: 139 ISDMNHLERFRFFPSQNTCSF*GPG 65
           ++ + H   ++    Q  CSF GPG
Sbjct: 86  VNLLFHGIEWQTEGVQLLCSFLGPG 110


>03_01_0567 +
           4186620-4186694,4186766-4186852,4187293-4187932,
           4188009-4188094,4189620-4190010,4190102-4190172,
           4190738-4190856,4191517-4191793
          Length = 581

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 284 SYVSQKHIIAELLCVCRRASDSLQFGSPRGRYNTNN 177
           +Y S   ++A+ +       + +   +PRGRYNT N
Sbjct: 342 TYRSHSAVLADDILSPSAGREHISLDAPRGRYNTTN 377


>07_03_0265 +
           15976331-15976645,15977575-15977784,15977869-15977916,
           15978307-15978675,15978736-15978747,15978763-15978870,
           15979156-15979493,15980313-15980430,15983247-15984107,
           15984457-15984750
          Length = 890

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -1

Query: 291 EVFVCITKTYYC*TPMRLSASV*FVAIRITEGQVQHK*RNQHKQRSFGQT 142
           EVF C   +  C     ++  + F  I  T+GQV     N H Q   G T
Sbjct: 175 EVFTCGDNSSLCCGHGEVATGLSFTVILTTDGQVYTCGSNTHGQLGHGDT 224


>01_01_0034 - 269356-270333,270809-270897,273621-273957
          Length = 467

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 335 LKSLSAWSWTSCMKAN*GFTHCWRNWISTIYAPRP 439
           L+ L A S  SC        H WR W+ ++  P P
Sbjct: 248 LRRLKARSLRSCTSFEALAAHVWRAWVLSLAPPPP 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,525,486
Number of Sequences: 37544
Number of extensions: 217260
Number of successful extensions: 383
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)