Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f11
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-10|CAB55125.1|  196|Caenorhabditis elegans Hypothetical...    30   0.70 
AL117204-8|CAB55123.1|  205|Caenorhabditis elegans Hypothetical ...    27   5.0  
AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical ...    27   6.6  
AL117204-11|CAB55126.1|  201|Caenorhabditis elegans Hypothetical...    27   8.7  

>AL117204-10|CAB55125.1|  196|Caenorhabditis elegans Hypothetical
           protein Y116A8C.19 protein.
          Length = 196

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -3

Query: 220 RCNSDHRGAGTTQITKSAQTTQFWSNTISDMNH---LERFRFFPSQNTCS 80
           RC   HR  G+T  T+SA+   F  N  SD++    L+   F P+ + CS
Sbjct: 144 RCQFIHRALGSTSTTESAEMADFKLNVESDLSRAFALDYTSFLPNWH-CS 192


>AL117204-8|CAB55123.1|  205|Caenorhabditis elegans Hypothetical
           protein Y116A8C.17 protein.
          Length = 205

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -3

Query: 220 RCNSDHRGAGTTQITKSAQTTQFWSNTISDMNH---LERFRFFPSQNTCS 80
           RC   HR   TT   K  +T  F  N  SD++    L+   F P+ + CS
Sbjct: 153 RCQFIHRSMDTTPAAKPMETADFKPNVQSDLSRAFALDSSSFLPNWH-CS 201


>AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical
           protein C18E3.3 protein.
          Length = 893

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 31  NVFAIKIFSDYDRDPRRSTYFVMERNGT--SQ-DDSCPILCL 147
           N F  K+F DY RD  RS +F+  +  +  SQ D +CP   L
Sbjct: 696 NDFKRKLFGDYYRDWMRSGHFMRHKVNSVCSQLDANCPYFIL 737


>AL117204-11|CAB55126.1|  201|Caenorhabditis elegans Hypothetical
           protein Y116A8C.20 protein.
          Length = 201

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -3

Query: 223 IRCNSDHRGAGTTQITKSAQTTQFWSNTISDMNH---LERFRFFPSQNTCS 80
           IRC   HR    T +T+   T  F  +  SD++    L+   F P+ + CS
Sbjct: 148 IRCQFIHRSMDATNVTRPIDTADFKLDVQSDLSRAFALDSSSFLPNWH-CS 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,421,464
Number of Sequences: 27780
Number of extensions: 208073
Number of successful extensions: 481
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)