Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f11
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   2.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   3.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   4.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   4.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   4.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 197 GRYNTNNEISTNNAV 153
           GR+NTN E+  N  V
Sbjct: 144 GRFNTNTEVVINTEV 158


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +2

Query: 353 WSWTSCMKAN*GFTHCW 403
           W W SC      F HC+
Sbjct: 414 WMWLSCSSFFQQFFHCY 430


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 194 RYNTNNEISTNNAVLVKHNIGHESS*EVP 108
           +YN NN    NN   + +NI +     VP
Sbjct: 97  KYNYNNNNYNNNCKKLYYNINYIEQIPVP 125


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 224 DSLQFGSPRGRYNTNNEISTNNAVLVKHNI 135
           +SL   +PR +Y    E + +N + ++H+I
Sbjct: 436 ESLSDVTPRKKYPFELEKALHNVMFIQHHI 465


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
          receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 51 NFNRKYVYSGVTQK 10
          NFN  YV  GVT K
Sbjct: 57 NFNLNYVNKGVTYK 70


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 AFVGERLIRCNSDHRGAGTTQITK 173
           A V  R I     H+   TT++TK
Sbjct: 917 AMVASRSINVKWQHKSQDTTEVTK 940


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 AFVGERLIRCNSDHRGAGTTQITK 173
           A V  R I     H+   TT++TK
Sbjct: 913 AMVASRSINVKWQHKSQDTTEVTK 936


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 194 RYNTNNEISTNNAVLVKHNIGHESS*EVP 108
           +YN NN    NN   + +NI +     +P
Sbjct: 97  KYNYNNNNYNNNCKKLYYNINYIEQIPIP 125


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 194 RYNTNNEISTNNAVLVKHNIGHESS*EVP 108
           +YN NN    NN   + +NI +     +P
Sbjct: 97  KYNYNNNNYNNNCKKLYYNINYIEQIPIP 125


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 194 RYNTNNEISTNNAVLVKHNIGHESS*EVP 108
           +YN NN    NN   + +NI +     +P
Sbjct: 97  KYNYNNNNYNNNCKKLYYNINYIEQIPIP 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,276
Number of Sequences: 438
Number of extensions: 2899
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)