Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f09
         (588 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6NR32 Cluster: RE39287p; n=12; Coelomata|Rep: RE39287p...    46   7e-04
UniRef50_A4RWM2 Cluster: Predicted protein; n=4; Eukaryota|Rep: ...    33   3.7  
UniRef50_Q12834 Cluster: Cell division cycle protein 20 homolog;...    32   8.6  

>UniRef50_Q6NR32 Cluster: RE39287p; n=12; Coelomata|Rep: RE39287p -
           Drosophila melanogaster (Fruit fly)
          Length = 526

 Score = 46.0 bits (104), Expect = 7e-04
 Identities = 39/140 (27%), Positives = 63/140 (45%)
 Frame = +2

Query: 161 MSQFNYLNEINSLATMDGPITRGPLQRWAKKGCNENINPSLSNSFKXXXXXXXXXXXXXL 340
           MSQFN+++++ +   MDG  TRGP  RW      + +  SL+ S                
Sbjct: 1   MSQFNFVSDLQNALIMDGE-TRGPAPRW-----KKKLEASLNGSVNTTRSV--------- 45

Query: 341 QKLSISANQSCNNSALSNNKTPTRNENXXXXXXXXXXXXXXXXXXXXXNKASKTPNKADR 520
             LS+S N S +    +  KTP ++                          SKTP   DR
Sbjct: 46  --LSVSYNTSFSG-VQAPTKTPGKSSEGKTKKSN--------------TTPSKTPGGGDR 88

Query: 521 FIPSRSNSNYDLCHYMLSRD 580
           FIP+R+ +N++L H+++++D
Sbjct: 89  FIPNRAATNFELAHFLVNKD 108


>UniRef50_A4RWM2 Cluster: Predicted protein; n=4; Eukaryota|Rep:
           Predicted protein - Ostreococcus lucimarinus CCE9901
          Length = 462

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +2

Query: 509 KADRFIPSRSNSNYDLCHYMLSRD 580
           + DRFIPSRS  + D+ HY LSR+
Sbjct: 30  QVDRFIPSRSALDLDVAHYNLSRE 53


>UniRef50_Q12834 Cluster: Cell division cycle protein 20 homolog;
           n=37; Eumetazoa|Rep: Cell division cycle protein 20
           homolog - Homo sapiens (Human)
          Length = 499

 Score = 32.3 bits (70), Expect = 8.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 161 MSQFNYLNEINSLATMDGPITRGPLQRWAKK 253
           M+QF + ++++SL  +D PI   P  RW +K
Sbjct: 1   MAQFAFESDLHSLLQLDAPIPNAPPARWQRK 31


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 468,114,421
Number of Sequences: 1657284
Number of extensions: 7687768
Number of successful extensions: 21137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20952
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 40658285374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)