Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f09
         (588 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   5.8  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   5.8  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 151  SLYHVPV*LFERNKQLSYNGWPYNPR 228
            SLY + + L    K L +  WP++P+
Sbjct: 1234 SLYVIVIFLLTLKKDLLHLDWPFDPK 1259


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 151  SLYHVPV*LFERNKQLSYNGWPYNPR 228
            SLY + + L    K L +  WP++P+
Sbjct: 1234 SLYVIVIFLLTLKKDLLHLDWPFDPK 1259


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 142 LSYKLINTIIILSLKISLFNRI*TFMN 62
           LSYK    +++L  + ++ N+   F+N
Sbjct: 177 LSYKASEIVVMLRSRFAILNKQIRFLN 203


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 142 LSYKLINTIIILSLKISLFNRI*TFMN 62
           LSYK    +++L  + ++ N+   F+N
Sbjct: 195 LSYKASEIVVMLRSRFAILNKQIRFLN 221


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,581
Number of Sequences: 336
Number of extensions: 2139
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)