Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12f08
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 31 0.15
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 30 0.20
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 28 1.1
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.9
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 1.9
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 1.9
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.9
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 27 2.5
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 4.4
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 26 4.4
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 5.8
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||... 25 7.6
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi... 25 7.6
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 7.6
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 7.6
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 25 7.6
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 7.6
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 25 7.6
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c... 25 7.6
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 30.7 bits (66), Expect = 0.15
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +1
Query: 340 KSSPSNKSAKISLNIGKPGAANRKKLSDNVRIKKGDMAEFLKRKELRQMKPV----DLQN 507
K P +K++ ++ + + N KK+ + +++K + E L+ + + KP+ D+
Sbjct: 873 KVLPVSKTSDLTDKVNRRQRKNDKKIKNKIQVKLSSILEMLRSRYKKFKKPIIDLNDIYI 932
Query: 508 DDENSSESSGHLRD 549
D+ N G +D
Sbjct: 933 DESNERVVKGKSKD 946
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 30.3 bits (65), Expect = 0.20
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Frame = +1
Query: 130 KKKFSCSLTINMYTLKGIFPEPKKDQKKNFIKENMKQLKYIQKQSPKETSKSLRTQDMTN 309
KKK S ++ L+ I + KK+ KK + + K+ K ++ K ++ +D
Sbjct: 178 KKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKPE 237
Query: 310 SATGSTIGQVKSSPSNKSAKISLNIGKPG-AANRKKLSDNVRIKK 441
S S++ +VK N+ A I + + A R +SD V +++
Sbjct: 238 ST--SSVEKVKE--GNRPASIHFHTRRKFLAQKRAAVSDPVALRE 278
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.9 bits (59), Expect = 1.1
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = +1
Query: 262 SPKETSKSLRTQDMTNSATGSTIGQVKSSPSNKSAKISLNIGKPGAANRKKLSDNVRIKK 441
+P+ S L TN+ G + ++S SNK A L + AA+ +L ++ +
Sbjct: 318 TPEAVSNKLVFLQNTNANLGERVSSLESQLSNKPANQPLGANEKDAAHITELETKLK-EL 376
Query: 442 GDMAEFLKRKELRQMKPVDLQNDDENS 522
+ L+R++ + +DL ++ S
Sbjct: 377 HEQNRRLQRQKSLATQEIDLLRENLKS 403
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -2
Query: 482 CLSSLRLRNSAMSPFFIRTLSESFFLFAAPGLPMFKLILALLFDGEDFT*PIVL 321
C S N++ + FF R L+ F+F A PM + ++F D+ +++
Sbjct: 253 CTSVTTYENASKARFFRRMLNAFIFIFCAS--PMLHYLSNIIFGNFDYRLSVII 304
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -2
Query: 482 CLSSLRLRNSAMSPFFIRTLSESFFLFAAPGLPMFKLILALLFDGEDFT*PIVL 321
C S N++ + FF R L+ F+F A PM + ++F D+ +++
Sbjct: 253 CTSVTTYENASKARFFRRMLNAFIFIFCAS--PMLHYLSNIIFGNFDYRLSVII 304
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -2
Query: 482 CLSSLRLRNSAMSPFFIRTLSESFFLFAAPGLPMFKLILALLFDGEDFT*PIVL 321
C S N++ + FF R L+ F+F A PM + ++F D+ +++
Sbjct: 225 CTSVTTYENASKARFFRRMLNAFIFIFCAS--PMLHYLSNIIFGNFDYRLSVII 276
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -2
Query: 482 CLSSLRLRNSAMSPFFIRTLSESFFLFAAPGLPMFKLILALLFDGEDFT*PIVL 321
C S N++ + FF R L+ F+F A PM + ++F D+ +++
Sbjct: 253 CTSVTTYENASKARFFRRMLNAFIFIFCAS--PMLHYLSNIIFGNFDYRLSVII 304
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 316 TGSTIGQVKSSPSNKSAKISLNIGKPGAANRKKLSDN 426
T ST Q SSP +KSA +S + K N K+ SD+
Sbjct: 203 TQSTHEQTLSSPISKSASVSKSENK-ALVNNKRYSDS 238
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 4.4
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +1
Query: 310 SATGSTIGQVKSSPSNKSAKISLNIGKPGAANRKKLSDNVRIKKGDMAEFLKRKELRQMK 489
S G+ + ++ S P + I + G A + + R K G A+ KRK+ + +K
Sbjct: 452 SKDGTNLKEINSVPEFSDENV---INQTGPAKKTPVQ---RRKDGKFAKSTKRKKQKSLK 505
Query: 490 PVDLQNDDEN 519
P D +N + +
Sbjct: 506 P-DTENQESS 514
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.8 bits (54), Expect = 4.4
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = +1
Query: 160 NMYTLKGIFPEPKKDQKKNFIKENMKQLKYIQKQSPKETSKSLRTQ--DMTNSATGSTIG 333
N L P +D++ + I +++++ +++S +E + L+ + + N S
Sbjct: 72 NEVALFATAPYDHEDEEADKIYQSVEEHLSKRRKSQREKQEQLQKEKYEKENPKVSSQFA 131
Query: 334 QVKSSPSNKSAKISLNIGKPGAANRKKLSDNVR 432
+K S + + NI +PG RKK + R
Sbjct: 132 DLKRGLSTLTDEDWNNIPEPGDLTRKKRTKQPR 164
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 5.8
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +1
Query: 193 PKKDQKKNFIKENMKQLKYIQKQSPKETSKSLRTQDMTNSATGSTIGQVKSSPSNKSAKI 372
P+K+Q+ + K K ++KQS + D + + + S+ +NK +I
Sbjct: 64 PRKNQQLASSERKTKNKKRLEKQSSAIADSIGESLDDPQTVYDEHLFDILSARTNKRGQI 123
Query: 373 SLN 381
+LN
Sbjct: 124 NLN 126
>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 7.6
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +1
Query: 223 KENMKQLKYIQ-KQSPKETSKSLR-TQDMTNSATGSTIGQVKSSPSNKSAKISLNIGKPG 396
+EN Q IQ Q + K L+ T+ TNSATGS K+ SN +++I
Sbjct: 97 QENEIQRLTIQITQDFQRCQKLLQVTKAQTNSATGSEALMAKNFLSNLASRIQTE----S 152
Query: 397 AANRKKLSDNVRIKKG 444
A RKK S ++ +G
Sbjct: 153 AQFRKKQSTYLKKLRG 168
>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 433 IKKGDMAEFLKRKELRQMKPVDLQNDD 513
+ K D+ E L ++ Q+K +D+Q DD
Sbjct: 164 LTKSDIFEILYNDQVYQIKVIDVQPDD 190
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 19 VKLKFISHFIKTKC 60
+K KF SHFIKT C
Sbjct: 395 IKGKFSSHFIKTLC 408
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 106 YLNNECVFKKKFSCSLTINMYTLKGIFPEPKKDQKKNFI 222
+L+ +F K T+ ++LK + DQK+NFI
Sbjct: 56 FLSANKIFYSKLRVYQTVRHWSLKQNWSSMSLDQKRNFI 94
>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 539
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 167 YMLIVKLQLNFFLNTHSLFRYQQIQHFYKYTTFIIIHLVLIKCEMNFNFTSS 12
YM ++ L + +L R+ Q+Q + T+I+ +V I +N+ F S
Sbjct: 219 YMRVMMLASPAYALFEALKRFLQVQGIFHPVTYILAIVVPINIFLNYLFVWS 270
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 340 KSSPSNKSAKISLNIGKPGAANRKKLSDNVRI 435
K SPS ++K I KP ++ ++S N RI
Sbjct: 139 KESPSVTTSKHVATITKPSTSSIARMSSNARI 170
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 188 GNIPFKVYMLIVKLQLNFFLNTHSLFRYQQIQH 90
G P + LI + QL F+N HS F + + QH
Sbjct: 236 GTGPHAIRWLIYR-QLRDFINLHSHFLFFEFQH 267
>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 124
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 352 SNKSAKISLNIGKPGAANRKKLSDNVRIKKGD 447
+ + A+ ++NIG+P + KL+DN + D
Sbjct: 93 TQEEAEAAVNIGQPKQSVASKLADNSNVVMAD 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,614
Number of Sequences: 5004
Number of extensions: 46087
Number of successful extensions: 184
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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