Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12f08
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 31 0.83
02_04_0375 - 22464814-22465577,22466930-22466950,22467036-22467213 31 0.83
01_05_0475 - 22571571-22572466,22572626-22572947 30 1.1
11_06_0710 - 26492093-26493460 29 3.4
02_04_0013 - 18910009-18910056,18910154-18910282,18910373-189104... 28 4.4
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340... 28 5.9
11_06_0443 - 23631407-23631586,23631736-23631848,23632156-236322... 28 5.9
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 28 5.9
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 27 7.7
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 30.7 bits (66), Expect = 0.83
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 181 IFPEPKKDQKKNFIKENMKQLKYIQKQSPKETSKSLRTQD 300
+ PE +K++ K FIKE +++ K KQ+ + K++ D
Sbjct: 272 VLPEDEKEKFKEFIKERVRERKRELKQAKEARKKAIDDMD 311
>02_04_0375 - 22464814-22465577,22466930-22466950,22467036-22467213
Length = 320
Score = 30.7 bits (66), Expect = 0.83
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 232 MKQLKYIQKQSPKETSKSLRTQDMTNSATGSTIGQVKSSPSNKSAKISLNIGK-PGAANR 408
+KQL + KQ TSK+ R S G + Q +SP++K + SL + K PG +
Sbjct: 44 LKQL-FDAKQRNSNTSKAQRRPGTWFSGNGVGVKQAPASPASKQMEPSLPLVKIPGPESS 102
Query: 409 KKLSDNVRIKKGDMAE 456
K+ + + I D E
Sbjct: 103 KENNGVMWISSPDRLE 118
>01_05_0475 - 22571571-22572466,22572626-22572947
Length = 405
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 115 NECVFKKKFSCSLTINMYTLKGIFPEPKKDQKKNFIKENMKQLKYIQKQ 261
NE + K+KFSC + +N L+ + + ++ N I N K L ++ Q
Sbjct: 129 NEEMVKRKFSCIICLNSDGLRNLLGDGSPIEQNNLIYSNGKCLIVVELQ 177
>11_06_0710 - 26492093-26493460
Length = 455
Score = 28.7 bits (61), Expect = 3.4
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 1/115 (0%)
Frame = +1
Query: 196 KKDQKKNFIKENMKQLKYIQKQSPKETSKSLRTQD-MTNSATGSTIGQVKSSPSNKSAKI 372
KK +KK+ K + +K+S K++ S +D S KS K
Sbjct: 138 KKKKKKSKSKSSDDDDDDAEKKSKKKSKNSDDDEDDKKKSKKKPKNPDDDEDDKKKSKKK 197
Query: 373 SLNIGKPGAANRKKLSDNVRIKKGDMAEFLKRKELRQMKPVDLQNDDENSSESSG 537
S + GA +KK + + E K+K + K +DE S+S G
Sbjct: 198 SSDEDNDGAKKKKKKKSKGKSSDEEDDEKPKKKSKSKSKSSSSDEEDEKKSKSEG 252
>02_04_0013 -
18910009-18910056,18910154-18910282,18910373-18910420,
18910532-18910594,18910675-18910713,18912107-18912180,
18913014-18913072,18913265-18913324,18913466-18913590,
18914054-18914112,18914356-18914419,18914516-18914569,
18914727-18914765,18916135-18916275
Length = 333
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 187 PEPKKDQKKNFIKENMKQLKYIQKQSPKETSKSLRTQD 300
PE ++++ K F+KE +++ K KQ+ + K++ D
Sbjct: 251 PEDEREKMKEFLKEKVRERKRELKQAKEARKKAIDDMD 288
>12_01_0433 -
3402250-3402536,3402644-3403030,3403523-3403957,
3404071-3404562,3404718-3404821,3404913-3404994,
3405085-3405441,3405532-3406089,3406376-3406479,
3406575-3406650,3406764-3406898,3407192-3407494,
3407581-3408345,3409459-3412591,3412763-3412882
Length = 2445
Score = 27.9 bits (59), Expect = 5.9
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Frame = +1
Query: 205 QKKNFIKENMKQLKYIQKQSPKETSKSLRTQDMTNSATG-STIGQVKSSPSNKSAKISLN 381
Q F++E +Q+ + PK +S R Q + N ++I + + ++ L
Sbjct: 390 QTSAFVEEEDEQMVHDPSIGPK-LRRSSRRQSVANELLLINSISESNNVSRAQTDAKGLK 448
Query: 382 IGKPGAANRKKLS-DNVRIKKGDMAEFLKRKELRQMKPVDLQNDDENSSESSG 537
+P N K S NV ++K + A KRK R + + SESSG
Sbjct: 449 TAQPLMHNAAKTSMKNVVVRKDENAGLTKRKTGRGRDKIAKSVGKVSLSESSG 501
>11_06_0443 -
23631407-23631586,23631736-23631848,23632156-23632218,
23632322-23632613
Length = 215
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/93 (21%), Positives = 40/93 (43%)
Frame = +1
Query: 190 EPKKDQKKNFIKENMKQLKYIQKQSPKETSKSLRTQDMTNSATGSTIGQVKSSPSNKSAK 369
+ KKD K I + KQ+K K+S T + T + T + SS S +
Sbjct: 49 DKKKDSKLPMIPSSKKQIKTAPKRSTGITINDMPTSKHASMLISHTSNKETSSDSRTESM 108
Query: 370 ISLNIGKPGAANRKKLSDNVRIKKGDMAEFLKR 468
+ P +++ ++ +++ + +FL+R
Sbjct: 109 TDI----PSSSDNSAVTPDIKNYISIIGQFLQR 137
>05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 27.9 bits (59), Expect = 5.9
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Frame = +1
Query: 190 EPKKDQKKN-FIKENMKQLKYIQKQSPKETSKSLRTQDMTNSATGSTIGQVKSSPSNKSA 366
EP+ +K+ FI+ +KY +++ S SL + + S+ S I S +K++
Sbjct: 823 EPRPSKKRRVFIRSVSDYVKYAKREPSNGRSTSLLSTIIKKSSAASHILNSSLSADSKTS 882
Query: 367 KISLNIGKPGAANRKKLSDNVRIKKGDMAEFLK--RKELRQMKPV-DLQNDDENSSES 531
S + K ++ + S + R + LK K ++ P+ N ++SS S
Sbjct: 883 GFSSSGNKHKGSHVEDASKSPRSNSDIHSSVLKTPSKSANELSPIFSPLNPSKSSSRS 940
>07_01_0353 +
2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 27.5 bits (58), Expect = 7.7
Identities = 24/90 (26%), Positives = 42/90 (46%)
Frame = +1
Query: 271 ETSKSLRTQDMTNSATGSTIGQVKSSPSNKSAKISLNIGKPGAANRKKLSDNVRIKKGDM 450
E S S + +A+ +T+ +S PS S+ ++ +G ++ K S +R KK
Sbjct: 152 ENSSSSASSSFRRAASNATLNSPRS-PSVTSS-VTKKVGSRTSSMDKGSSMPIR-KKSST 208
Query: 451 AEFLKRKELRQMKPVDLQNDDENSSESSGH 540
A+ + + VDL+ DE +S GH
Sbjct: 209 ADS-RDSRFMMLPQVDLKASDEVRLDSRGH 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,131,887
Number of Sequences: 37544
Number of extensions: 243227
Number of successful extensions: 710
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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