Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12f07
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0133 - 1057679-1057880,1058112-1058377 30 1.2
03_06_0083 - 31532213-31532775,31534016-31534043 29 2.9
12_01_0862 + 8161117-8163913,8164000-8164019 27 6.6
11_06_0198 - 21158350-21159528 27 6.6
10_08_0508 - 18416688-18416795,18417058-18417477 27 6.6
08_01_0217 + 1738321-1739104,1739683-1739915,1740002-1740292,174... 27 6.6
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79... 27 6.6
06_03_0849 - 25344261-25344416,25344652-25344808,25344917-253450... 27 6.6
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921... 27 6.6
02_02_0652 - 12651163-12653210,12653327-12653627 27 6.6
01_01_0525 - 3854508-3854924 27 6.6
06_03_0606 - 22689935-22689998,22690716-22691159,22691669-226920... 27 8.8
04_01_0106 + 1102880-1105691,1105781-1105806 27 8.8
03_03_0098 + 14392509-14392748,14393116-14393196,14393517-143937... 27 8.8
03_01_0593 + 4379263-4379377,4380359-4380491,4380585-4380656,438... 27 8.8
01_07_0096 - 41059668-41059886,41059978-41060154,41060575-410607... 27 8.8
01_01_1125 - 8920590-8924372 27 8.8
>03_01_0133 - 1057679-1057880,1058112-1058377
Length = 155
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -2
Query: 480 CTQ--RLSWPCRSKQPKMRGLEPNQRLPSTLR 391
CT+ RL WPCR QP +GL P R L+
Sbjct: 64 CTRGARLGWPCR--QPNTKGLHPWMRASELLK 93
>03_06_0083 - 31532213-31532775,31534016-31534043
Length = 196
Score = 28.7 bits (61), Expect = 2.9
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 286 RALMSGVSSRNR--MAGRGKSGLST*LGWPLKP*PTHSRSPILASSVFPVDPALA 128
R + V +R R ++G G+ GLS LG + P +P L+SS+ DP LA
Sbjct: 94 RGRVGDVEARRRPEISGDGRRGLSMALGSGVVPRSPMVLTPALSSSLARYDPDLA 148
>12_01_0862 + 8161117-8163913,8164000-8164019
Length = 938
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 256 NRMAGRGKSGLST*LGWPLKP*PTHSRSPILASSVFPVD 140
NR+ +G S ++ LG K P H ++ L S+FP D
Sbjct: 407 NRLDNQGLSMVTRLLGLSYKHLPVHLKNCFLLCSIFPED 445
>11_06_0198 - 21158350-21159528
Length = 392
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -2
Query: 180 HGHQSWQVQ-CFQWIQPWRRQE 118
H H W+ Q C Q + WRRQE
Sbjct: 262 HHHDQWKKQQCMQDCRQWRRQE 283
>10_08_0508 - 18416688-18416795,18417058-18417477
Length = 175
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 194 WFQRPAQLRRQA*LPPACHPVP*GHP 271
W + A+ R + LP CHPVP G P
Sbjct: 92 WIETAARQRGKLRLPKQCHPVP-GSP 116
>08_01_0217 +
1738321-1739104,1739683-1739915,1740002-1740292,
1740524-1740616,1740912-1741040,1741522-1741695,
1741883-1741990,1742073-1742279
Length = 672
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 261 EDTPDIKALREKEKGDWRKLTLEEKKTLYR 350
ED P I L + +GDW + + E T YR
Sbjct: 212 EDPPRILHLNPRLRGDWSQRPIIEHNTCYR 241
>08_01_0107 -
789217-789984,790070-790219,790303-790890,790968-791093
Length = 543
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 225 RPDFPLPAIRFREDTPDIKALREKEKGDWRK 317
+ D P A R R+DT D K RE+ + +RK
Sbjct: 24 KDDSPNKAARLRDDTDDDKGKRERRRWLFRK 54
>06_03_0849 -
25344261-25344416,25344652-25344808,25344917-25345056,
25345160-25345295,25345392-25345663,25345809-25346068,
25346716-25347035,25347287-25347352,25347439-25347510,
25347609-25347680,25347776-25347858,25348068-25348139,
25348389-25348485,25348918-25349050,25349158-25349236
Length = 704
Score = 27.5 bits (58), Expect = 6.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 255 TGWQAGGSQACLRSWAG 205
TGW AGG C +W G
Sbjct: 44 TGWSAGGGDPCGAAWMG 60
>02_05_1142 -
34391144-34391590,34391715-34391904,34392058-34392128,
34392403-34392515,34392656-34392749,34392843-34392908,
34393120-34393282,34393441-34393547,34393918-34394115,
34394204-34394329,34394800-34394904,34395056-34395098,
34395334-34395391,34395479-34395659,34395751-34395917,
34396010-34396249,34396341-34396781,34397147-34397272,
34397457-34397561,34397935-34398002,34398169-34398272,
34398856-34399008,34399472-34399570,34399919-34400046,
34400149-34400300,34400423-34400502
Length = 1274
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 96 ALINAIRVPVCARAGSTGNTELAKIGDREWVG 191
AL+ +PVCA G GN + + R W G
Sbjct: 352 ALVRPAVLPVCAMTGGGGNDKRSPPQQRSWWG 383
>02_02_0652 - 12651163-12653210,12653327-12653627
Length = 782
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 37 FSYNSSPILPAKWPII*CAGRSSMLSVFLSAPGLD 141
+ +P++P+KW + GR+ +LS F LD
Sbjct: 554 YDVTGTPVMPSKWIHVVAVGRTWLLSAFALINFLD 588
>01_01_0525 - 3854508-3854924
Length = 138
Score = 27.5 bits (58), Expect = 6.6
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 171 GDREWVGY-GFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEKGDWRK--LTLEEKKT 341
G + W G++GQP+Y+D PA R E P+ A E+ G ++ + EEK
Sbjct: 48 GGKWWAPLLGWSGQPDYIDAQ----PAAR-EEARPNPMAAAEQRGGGGKRFGVLTEEKAR 102
Query: 342 LYRASFCQT 368
RA +T
Sbjct: 103 QLRARMMET 111
>06_03_0606 - 22689935-22689998,22690716-22691159,22691669-22692057,
22692130-22692223,22692507-22692599,22692705-22692913,
22692999-22693833,22693948-22694038,22698069-22698892,
22699384-22700489,22701353-22701415
Length = 1403
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 312 ANHPFLFHGEP*CQGCPHGTGWQAGG--SQACLRSWAGR 202
ANHP + GE C G++AGG + A L W+ R
Sbjct: 1241 ANHPGVAVGEGGASQCREAEGFRAGGRAAPATLAPWSMR 1279
>04_01_0106 + 1102880-1105691,1105781-1105806
Length = 945
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 256 NRMAGRGKSGLST*LGWPLKP*PTHSRSPILASSVFPVD 140
NR+ +G + ++ LG + P H ++ L SS+FP D
Sbjct: 407 NRLDNQGLNMVTRLLGLSYRHLPAHLKNCFLLSSIFPED 445
>03_03_0098 +
14392509-14392748,14393116-14393196,14393517-14393767,
14393887-14394239,14394547-14394848
Length = 408
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +3
Query: 300 KGDWRKLTLEEK 335
KG+WRKLTLE+K
Sbjct: 196 KGNWRKLTLEKK 207
>03_01_0593 +
4379263-4379377,4380359-4380491,4380585-4380656,
4380739-4380813,4380896-4380967,4381055-4381126,
4381251-4381322,4381403-4381468,4381547-4381612,
4381689-4381978,4382072-4382355,4382690-4382961,
4383411-4383546,4383840-4383970,4384078-4384234,
4384334-4384477
Length = 718
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 252 GWQAGGSQACLRSWAG 205
GWQA G C +SW G
Sbjct: 57 GWQASGGDPCGQSWQG 72
>01_07_0096 -
41059668-41059886,41059978-41060154,41060575-41060778,
41060874-41061089,41061698-41061961,41062413-41062654,
41062728-41062851,41062852-41062991,41063349-41063397,
41063735-41063891,41063982-41064130,41064267-41064299,
41064497-41064575,41064961-41065040,41065438-41065560
Length = 751
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -1
Query: 211 GWPLKP*PTHSRSPILASSVFPVDPALAQTGTRIALMSAR 92
GWPL + + P++ + FP D +TG + L +
Sbjct: 119 GWPLSVFLSPNLKPLMGGTYFPPDDKYGRTGFKTILRKVK 158
>01_01_1125 - 8920590-8924372
Length = 1260
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 REDTPDIKALREKEKGDWRKLTLEEKKTLYRASF-CQTFAEFQAPTGE 398
+E PD KG + K +EE +++ R F C+ AEF G+
Sbjct: 1060 KEMVPDFVGFMSLVKGLYAKGRMEESRSILREMFQCKEVAEFINSVGD 1107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,222,940
Number of Sequences: 37544
Number of extensions: 356660
Number of successful extensions: 991
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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