Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f07
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical pr...   105   2e-23
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    31   0.64 
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    30   0.85 
U29535-5|AAY55856.1|  159|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    27   6.0  
Z93375-1|CAB07563.1|  328|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AL117206-4|CAB60447.1|  447|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical
           protein W09C5.8 protein.
          Length = 175

 Score =  105 bits (252), Expect = 2e-23
 Identities = 52/115 (45%), Positives = 68/115 (59%)
 Frame = +3

Query: 165 KIGDREWVGYGFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEKGDWRKLTLEEKKTL 344
           K   RE VGYG NG   Y DR D+  PAIRFR++   I  +R KE+ DW+ L+ EEKK L
Sbjct: 29  KAAGRELVGYGANGDNIYQDRLDYWYPAIRFRKEDSVIAPIRAKEQADWKNLSAEEKKLL 88

Query: 345 YRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIYMAMKVFVYSPIPDSLSEE 509
           YR SF QT +EF+APTG WK +    L +  L  +  + + V VY  +P +   E
Sbjct: 89  YRYSFRQTLSEFEAPTGYWKVISAVILSVLGLCTYYAVLLNVCVYPELPPTFQNE 143


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 88  CAGRSSMLSVFLSAPGLDPLETLNLPRLVTVSG*AMVSTASPTT*TGLTSPC-LPSGSVR 264
           C GR+   SV   +P + PL     P +VTV+      + +P    G T P   P GSV 
Sbjct: 182 CVGRNITYSVVTDSPVVPPLVVTGTPSIVTVT--PPSPSVTPGGRPGSTPPATFPPGSVS 239

Query: 265 T 267
           T
Sbjct: 240 T 240


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 88  CAGRSSMLSVFLSAPGLDPLETLNLPRLVTVSG*AMVSTASPTT*TGLTSPC-LPSGSVR 264
           C GR+   SV   +P + PL     P +VTV+      + +P    G T P   P GS+ 
Sbjct: 105 CVGRNITYSVVTDSPVVPPLVVTGTPSIVTVT--PPSPSVTPGGRPGSTPPATFPPGSIS 162

Query: 265 T 267
           T
Sbjct: 163 T 163


>U29535-5|AAY55856.1|  159|Caenorhabditis elegans Hypothetical
           protein C25H3.15 protein.
          Length = 159

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +2

Query: 2   KLSNFASVGECDFRTIQVQSFQQNGQLSDAPGAHQCYPCSCLRQGWIHWKH*TCQD 169
           KL  + ++G C+  +++ Q  ++    S +   H  Y     RQ W+ W++ TC D
Sbjct: 73  KLKTYCALG-CE-ESLEAQLVKKIPSNSPSCVQHYTYNLERRRQDWLLWRNGTCLD 126


>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
           neurexin-like protein 1 protein.
          Length = 1655

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = -3

Query: 326 EGQFAPITLFF-FTESLNVRGVLTEPDGRQGEVRPVYVVGLAVETIAYPLTVTNLGKFSV 150
           +  F+ +++ F F++S    G+L   +  QG++  +YVVG   + +   L  TN+  F +
Sbjct: 265 DSHFSRLSMDFRFSDSDAKEGILVYGETSQGKIFKIYVVGTKGKVM---LDTTNVADFEL 321

Query: 149 SSGSSPGADRNTDSIDERPAHQIIGHFAGRIGLELYENHTHQ 24
               S   ++    +     H II      I   L +++ H+
Sbjct: 322 REDHSISTEK---KVSPFRFHSIIVKIVDGIFNMLVDDNVHR 360


>Z93375-1|CAB07563.1|  328|Caenorhabditis elegans Hypothetical
           protein C38C6.3 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
 Frame = -2

Query: 462 WPCRSKQPKMRGLEPNQRLPSTLRWGPGTQRRSDRMKLCTEFSFLRGSICAN-HPFLFHG 286
           +P   K+   R   P  +    L   PG + R D    C +FS + G    N +P  +  
Sbjct: 87  FPTLQKEKDWRKYCPANQYQFQLTCRPGKKLRYDLQLFCQQFSDMCGVPNINLYPSRYQN 146

Query: 285 EP*CQGCPHGTGW-QAGGSQACLRSWA 208
               +G P G G  Q  G+    RSWA
Sbjct: 147 AD-DEGRPAGYGQKQKNGNFGIGRSWA 172


>AL117206-4|CAB60447.1|  447|Caenorhabditis elegans Hypothetical
           protein Y67A10A.6 protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 35  DFRTIQVQSFQQNGQLSDAPGAHQCYPCS-CLRQGWIHWKH 154
           DF  +    F    ++ + PG+ Q  PCS C   G IH  H
Sbjct: 119 DFEVMPGHLFVDQVRVFEMPGSSQINPCSACNSDGTIHCFH 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,419,233
Number of Sequences: 27780
Number of extensions: 280272
Number of successful extensions: 807
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)