Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f06
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    27   1.8  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     25   7.1  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   9.4  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   9.4  

>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 405 TGMVHSTGNISACKARMVQNTVRTVHMGR-YKDRKAHMGHSWAR 277
           T  +H  G+   CK  +V+N    +   R  + R AH+G+   R
Sbjct: 91  TRSLHDVGDFEQCKRHLVENGKLFIQRARACRQRIAHLGYPLIR 134


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 519 ALAHKTGTNQMKDMGRRGRTVRIETDRVHKA 427
           A+  K G+N + D+G+  R V I  +  HK+
Sbjct: 22  AILVKDGSNTIDDIGKTDRLVSIYPNEKHKS 52


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +1

Query: 139 FHNTEKKWLAVDLATLDVLPADQALVKI 222
           F   +  W+  DL+++++ P D++L+K+
Sbjct: 73  FFEGDTSWMHSDLSSVNLDPIDRSLLKV 100


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/68 (22%), Positives = 29/68 (42%)
 Frame = -3

Query: 528 HRAALAHKTGTNQMKDMGRRGRTVRIETDRVHKAHSMACKTTGMVHSTGNISACKARMVQ 349
           H  +  H     Q ++  R+   +   +DR+      A  T  + H T ++S C+ R+ Q
Sbjct: 641 HGCSELHHRLKLQREEYERQQNHIYKLSDRISNFREKAWSTEHLEHLTSDMSMCEKRIDQ 700

Query: 348 NTVRTVHM 325
              R + +
Sbjct: 701 VLQRVMDL 708


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,095
Number of Sequences: 5004
Number of extensions: 20120
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)