Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12f03
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 35 0.011
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 31 0.19
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 2.3
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 27 2.3
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 27 2.3
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 27 2.3
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 3.0
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 4.0
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 26 5.3
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 7.0
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 25 7.0
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 9.3
>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 112
Score = 34.7 bits (76), Expect = 0.011
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +2
Query: 275 VIKKILETGGGMPL-HDGCTVSIAFSGYWENELQPFDVMSLNNPMTVDLKDSGLLPGLDI 451
V K+++ +G G G +++ ++G N + + +P + L+ G D
Sbjct: 3 VEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDE 62
Query: 452 AVRSMLVGEISLFLFSYKVMYGEMGIPPRIKPKSDCVFYIKLV 580
V M +GE + + YG G P I P S +F ++L+
Sbjct: 63 GVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELL 105
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 30.7 bits (66), Expect = 0.19
Identities = 24/83 (28%), Positives = 36/83 (43%)
Frame = +2
Query: 332 VSIAFSGYWENELQPFDVMSLNNPMTVDLKDSGLLPGLDIAVRSMLVGEISLFLFSYKVM 511
VS+ + G N + FD P T +L ++ G D+ + M VG +
Sbjct: 279 VSMRYIGRLTNG-KVFDKNITGKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMA 337
Query: 512 YGEMGIPPRIKPKSDCVFYIKLV 580
YG + P I SD VF +KL+
Sbjct: 338 YGSKRL-PGIPANSDLVFDVKLL 359
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.1 bits (57), Expect = 2.3
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -2
Query: 513 YITLYENKN-SDISPTSIDLTAISSPGSKPLSLRSTVIGLFKLITSNGCNSFSQYPENAI 337
+ TL +N +D S+D A + + + T L +TS S++ EN+I
Sbjct: 82 FATLDSKRNVNDTEVESMDSQAYKKELIEQIMIAQTECSLALDMTSL---LLSKFKENSI 138
Query: 336 ETVHPSCKGIPPP 298
ET+ P K PP
Sbjct: 139 ETISPFLKSTVPP 151
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 566 YIKLVKSMLTPK--EGALNLNEPNTFQR 643
YI V +++PK A N+N+PN F+R
Sbjct: 456 YISYVTPIMSPKLWSEARNMNDPNAFER 483
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 86 NGLDLRECTTTGSILHINEIYEENDDNDTTESKVF 190
+GLDL TT N IY+E+D N T +S F
Sbjct: 264 DGLDLNTVFTTND-WEKNIIYDESDVNKTNQSSFF 297
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 552 DFGFILGGIPISPYITLYENKNSDISPTSIDLTAI 448
DFG + G + +S I +E KNS++ P +TA+
Sbjct: 176 DFGRVNGNLALSRAIGDFEFKNSNLEPEKQIVTAL 210
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 143 IYEENDD-NDTTESKVFKTIDILGEPVKNFEVLKNELIPVDENH 271
IYE DD DT S F + L + KNE++P+ +H
Sbjct: 230 IYEIGDDLEDTFRSFSFLELHSLAIKLSKLVTCKNEVVPIMVSH 273
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 4.0
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -2
Query: 501 YENKNSDISPTSIDLTAISSPGSKPLSLRSTVIGLFKLITSNGCNSF-SQYPENAIETVH 325
YE + D+ + LT +KP R + K T++ +SF S+ E A E
Sbjct: 256 YERRRGDVKDRAEALTITKFKTAKPTYKRPGMGPGGKDATASSSSSFSSKREEAAAEPSS 315
Query: 324 PSCKGIPPP 298
+ IPPP
Sbjct: 316 STATDIPPP 324
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = +2
Query: 230 EVLKNELIPVDENHYVIKKILETGGGMPLHDGCTVSIAFSGYWENEL 370
E L N P H +++++ E +P D C V++ W++ +
Sbjct: 451 ENLDNLYDPDSHVHLILQELGEPCKSVPQEDNCLVTLPLYNRWDSSI 497
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -3
Query: 383 RQMVVTHFPSIQRMLLRLCIHHARAYLHQF 294
R + +FPS+ ++ +H R Y+ QF
Sbjct: 325 RGSIFQYFPSLSKLFRYYGLHSTRTYVEQF 354
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -2
Query: 510 ITLYENKNSDISPT-SIDLTAISSPGSKPLSLRSTVIGLFKLITSNGCNSFSQYPENAIE 334
+T E KN ID + SP P+S++ + L +S+ + F+++ + +
Sbjct: 192 VTPREPKNLQSQEVMDIDSSPFVSPS--PISMKMDMPSLNDRNSSHALSLFAEFEHESYD 249
Query: 333 TVHPSCKGIPPP 298
+++PS G+ PP
Sbjct: 250 SINPS--GMSPP 259
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 495 NKNSDISPTS--IDLTAISSPGSKPLS 421
+ NSD P S +D + SPGSKP+S
Sbjct: 158 SSNSDNFPPSPKVDTSNTVSPGSKPIS 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,153
Number of Sequences: 5004
Number of extensions: 57724
Number of successful extensions: 160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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