Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12f02
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    36   0.004
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    29   0.63 
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   5.8  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   7.7  

>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 682 NSIDWGVLAIYTCKASCNKGSAYMLE 605
           N++DWG+L+IY C ASC+  +  + E
Sbjct: 232 NALDWGILSIYVCSASCDLANCGLAE 257


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +1

Query: 112  YFSTYSMEEERLQRIKSRVYRR*SDSAQLYPLQKNLIL--STSVKAYMVVLSLGTQVPY 282
            YF+  S EE  + R+    +R    + Q+ PL KN+++  ++++ A +V+ S+ T V Y
Sbjct: 1109 YFTVTSNEERFVSRLFQDAFRDRWTNPQILPLLKNVLIPFTSALIAAVVLPSVFTYVTY 1167


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 254 C*AWGRR--CHTCIKSLRMGYTVCCCRY 331
           C A+G +   +TC+K L    + C CRY
Sbjct: 145 CSAYGMKENIYTCLKDLYCSVSCCDCRY 172


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 520 SFTDFFPYSSDTYVKKSFKPLN 455
           SF+ FF  SS TY+ K  + LN
Sbjct: 28  SFSSFFKKSSQTYLSKRSEKLN 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,606
Number of Sequences: 5004
Number of extensions: 52655
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)