Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e24
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...   154   5e-40
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.   137   6e-35
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...   137   6e-35
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...   134   8e-34
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.70 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   2.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   4.9  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score =  154 bits (374), Expect = 5e-40
 Identities = 62/155 (40%), Positives = 100/155 (64%)
 Frame = +2

Query: 92  IKQDWWETAVFYQLNTRSFMXXXXXXXXXXXXXTTRLDYLKELGVDAAWLSPIFKSAMHD 271
           +  +W++ A+ YQ+  RSF              T R+D++ ++G DA WLSPI+KS   D
Sbjct: 22  VDANWYKNALVYQIYPRSFQDSDGDGIGDLNGITARMDHIADIGADALWLSPIYKSPQVD 81

Query: 272 FGYDTTDYYTIQPEYGSMEDFEHLLKKANELNIKIVLELVPNHTSNESEWFLKSSNRDEY 451
           FGYD +++  + P YG++ DF+ L+++A  L +K++L+ VPNH+S+E  WF KS  R + 
Sbjct: 82  FGYDISNFTDVDPVYGTLADFDRLVRRAKSLGLKVILDFVPNHSSHEHPWFKKSVQRIKP 141

Query: 452 YSDWFIWESGHLDNMGIRKPPNNWVSVFRKSAWKY 556
           Y ++++W    + N G R+PPNNW+SVF  SAW++
Sbjct: 142 YDEYYVWRDARIVN-GTRQPPNNWLSVFWGSAWQW 175


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score =  137 bits (332), Expect = 6e-35
 Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 2/176 (1%)
 Frame = +2

Query: 35  IFVIIFSLSRVGARYENV--NIKQDWWETAVFYQLNTRSFMXXXXXXXXXXXXXTTRLDY 208
           I   + +LS V A ++ +  N+K+D     + YQ+  RSF                +LD+
Sbjct: 5   IVFCLMALSIVDAAWKPLPENLKED----LIVYQVYPRSFKDSNGDGIGDIEGIKEKLDH 60

Query: 209 LKELGVDAAWLSPIFKSAMHDFGYDTTDYYTIQPEYGSMEDFEHLLKKANELNIKIVLEL 388
             E+GVD  WLSPI+ S M DFGYD ++Y  + P +G++ D ++L+  A+E  +KI+L+ 
Sbjct: 61  FLEMGVDMFWLSPIYPSPMVDFGYDISNYTDVHPIFGTISDLDNLVSAAHEKGLKIILDF 120

Query: 389 VPNHTSNESEWFLKSSNRDEYYSDWFIWESGHLDNMGIRKPPNNWVSVFRKSAWKY 556
           VPNHTS++ EWF  S    E Y++++IW  G + N G R PP NWV VF  SAW +
Sbjct: 121 VPNHTSDQHEWFQLSLKNIEPYNNYYIWHPGKIVN-GKRVPPTNWVGVFGGSAWSW 175


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score =  137 bits (332), Expect = 6e-35
 Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 2/176 (1%)
 Frame = +2

Query: 35  IFVIIFSLSRVGARYENV--NIKQDWWETAVFYQLNTRSFMXXXXXXXXXXXXXTTRLDY 208
           I   + +LS V A ++ +  N+K+D     + YQ+  RSF                +LD+
Sbjct: 5   IVFCLMALSIVDAAWKPLPENLKED----LIVYQVYPRSFKDSNGDGIGDIEGIKEKLDH 60

Query: 209 LKELGVDAAWLSPIFKSAMHDFGYDTTDYYTIQPEYGSMEDFEHLLKKANELNIKIVLEL 388
             E+GVD  WLSPI+ S M DFGYD ++Y  + P +G++ D ++L+  A+E  +KI+L+ 
Sbjct: 61  FLEMGVDMFWLSPIYPSPMVDFGYDISNYTDVHPIFGTISDLDNLVSAAHEKGLKIILDF 120

Query: 389 VPNHTSNESEWFLKSSNRDEYYSDWFIWESGHLDNMGIRKPPNNWVSVFRKSAWKY 556
           VPNHTS++ EWF  S    E Y++++IW  G + N G R PP NWV VF  SAW +
Sbjct: 121 VPNHTSDQHEWFQLSLKNIEPYNNYYIWHPGKIVN-GKRVPPTNWVGVFGGSAWSW 175


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score =  134 bits (323), Expect = 8e-34
 Identities = 68/180 (37%), Positives = 102/180 (56%), Gaps = 8/180 (4%)
 Frame = +2

Query: 41  VIIFSLSRVGARYENVNIKQDWWETAVFYQLNTRSFMXXXXXXXXXXXXXTTRLDYLKEL 220
           V++  L  VG      N  + WW+ A+FYQ+  RSFM               +L +  E 
Sbjct: 5   VVVVLLLAVGLGAGQNN--KGWWKNAIFYQVYPRSFMDSNSDGIGDLKGIKDKLSHFIES 62

Query: 221 GVDAAWLSPIFKSAMHDFGYDTTDYYTIQPEYGSMEDFEHLLKKANELNIKIVLELVPNH 400
           G+ A WLSPI +S M DFGYD +D+  + P +G+++D E L  +A + N+K++L+LVPNH
Sbjct: 63  GITAIWLSPINRSPMVDFGYDISDFKDVDPIFGTIKDLEDLTAEAKKQNLKVILDLVPNH 122

Query: 401 TSNESEWFLKS-----SNRDEYYSDWFIWESGHLDNMG--IR-KPPNNWVSVFRKSAWKY 556
           TS++ +WF  S     +N    Y D++IW     D+ G  I+ K PNNW+SVF  + W +
Sbjct: 123 TSDQHKWFQMSINNTNNNNTNKYKDYYIWVDPVKDDKGNPIKDKYPNNWLSVFNGTGWTF 182


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 248 IFKSAMHDFGYDTTDYYTIQPEYGSMEDFEHLLKKANEL 364
           IF   ++  G + + Y+T     G    F  +LK+AN L
Sbjct: 317 IFGHHLNRLGREISTYFTFTRPCGITLTFHEILKRANTL 355


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 112 NRGVLSAQYKVVHG 153
           NRG+LSA Y V +G
Sbjct: 208 NRGLLSASYLVCYG 221


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 112 NRGVLSAQYKVVHG 153
           NRG+LSA Y V +G
Sbjct: 84  NRGLLSASYLVCYG 97


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 251 FKSAMHDFGYDTTDYYTIQPEYGS 322
           F+S  + FG    DY  ++ E+ S
Sbjct: 370 FRSKPYRFGIQNGDYVVLETEWSS 393


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 251 FKSAMHDFGYDTTDYYTIQPEYGS 322
           F+S  + FG    DY  ++ E+ S
Sbjct: 76  FRSKPYRFGIQNGDYVVLETEWSS 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,030
Number of Sequences: 438
Number of extensions: 3428
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)