Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12e22
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 258 5e-70
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 258 5e-70
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 84 1e-17
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 61 1e-10
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 26 3.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 4.1
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 26 4.1
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 26 4.1
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 7.2
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 7.2
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 9.5
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 25 9.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.5
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 258 bits (631), Expect = 5e-70
Identities = 117/179 (65%), Positives = 146/179 (81%)
Frame = +3
Query: 3 IYKVFDAIMKFKKEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAI 182
IY++FDA+M +K+E+ LL K+ VTIK ++ + +GKALLKVVMR +LPA +AL++MI +
Sbjct: 281 IYRIFDAVMNSRKDEVFTLLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADALMEMIVL 340
Query: 183 HLPSPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRV 362
HLPSP AQ+YR E LYEGP DDE A+GI++CD APLM+YVSKMVPTSD+GRFYAFGRV
Sbjct: 341 HLPSPKTAQQYRAETLYEGPMDDECAVGIRNCDANAPLMIYVSKMVPTSDRGRFYAFGRV 400
Query: 363 FSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGV 539
FSG V +G K RI GPN+ PGKK+DL+ K IQRT+LMMG +E IED P+GNI GLVGV
Sbjct: 401 FSGTVRSGLKVRIQGPNYVPGKKDDLFIKAIQRTVLMMGSRIEPIEDCPAGNIIGLVGV 459
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 258 bits (631), Expect = 5e-70
Identities = 117/179 (65%), Positives = 146/179 (81%)
Frame = +3
Query: 3 IYKVFDAIMKFKKEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAI 182
IY++FDA+M +K+E+ LL K+ VTIK ++ + +GKALLKVVMR +LPA +AL++MI +
Sbjct: 281 IYRIFDAVMNSRKDEVFTLLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADALMEMIVL 340
Query: 183 HLPSPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRV 362
HLPSP AQ+YR E LYEGP DDE A+GI++CD APLM+YVSKMVPTSD+GRFYAFGRV
Sbjct: 341 HLPSPKTAQQYRAETLYEGPMDDECAVGIRNCDANAPLMIYVSKMVPTSDRGRFYAFGRV 400
Query: 363 FSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGV 539
FSG V +G K RI GPN+ PGKK+DL+ K IQRT+LMMG +E IED P+GNI GLVGV
Sbjct: 401 FSGTVRSGLKVRIQGPNYVPGKKDDLFIKAIQRTVLMMGSRIEPIEDCPAGNIIGLVGV 459
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 84.2 bits (199), Expect = 1e-17
Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 2/181 (1%)
Frame = +3
Query: 3 IYKVFDAIMKFKKEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAI 182
+YK+ + + E++ L + +K +D D K LL+++ S+ + +
Sbjct: 388 LYKLHTLTISDEAEKLKKHLSSFQIYLKPKDYLLDPKPLLQLICASFFGFPVGFVNAVTR 447
Query: 183 HLPSPVVAQKYRMEMLYEGPHDDEAAIGI--KSCDPEAPLMMYVSKMVPTSDKGRFYAFG 356
H+PSP + Y GP + I S + APL+M+V+K+ T D FYAF
Sbjct: 448 HIPSPRENAARKASQSYIGPINSSIGKAILEMSREESAPLVMHVTKLYNTVDANNFYAFA 507
Query: 357 RVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVG 536
RV+SG+V GQK +++G N++ +ED+ I + RY ++ +G + L G
Sbjct: 508 RVYSGQVKKGQKVKVLGENYSLEDEEDMVVAHIAEICVPCARYRLHVDGAVAGMLVLLGG 567
Query: 537 V 539
V
Sbjct: 568 V 568
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 60.9 bits (141), Expect = 1e-10
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Frame = +3
Query: 3 IYKVFD-AIMKFKKEEIDDLLKKIGVTIKHED-SDKDGKALLKVVMRSWLPAGEALLQMI 176
++ V++ A+ E I+ ++K + + + D KD + LL + + WLP A+L
Sbjct: 288 LWAVYESAVSNRNLENIEKIIKALNIKVLPRDIKSKDPRNLLLAIFQQWLPLSTAILLTA 347
Query: 177 AIHLPSPVVAQKYR-MEMLYEGPH----DDEAAIGIKSCD--PEAPLMMYVSKMVPTSDK 335
+PSP+ AQ R ++L PH D + + ++SCD E P+++Y+SKMV S++
Sbjct: 348 IREIPSPINAQANRARKVLSSTPHYEMIDPDITLAMESCDASKEQPVLVYISKMVAFSER 407
Score = 50.8 bits (116), Expect = 1e-07
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +3
Query: 330 DKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEK-TIQRTILMMGRYVEAIEDV 506
DK F R++SG + GQ+ + GP + P E K T++ LMMG+ + +E V
Sbjct: 464 DKDILIGFARIYSGTISVGQEVYVYGPKYDPVNPEKHITKVTVESLYLMMGQELVYLETV 523
Query: 507 PSGNICGLVGV 539
P+GN+ + G+
Sbjct: 524 PAGNVFAIGGL 534
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 234 EGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSD 332
+G H EA +K CDPE L + SK T++
Sbjct: 193 DGTHLAEA---LKKCDPETTLFLIASKTFTTAE 222
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 4.1
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +3
Query: 300 MYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 479
+YV VP D RFY + ++ + T + + +F P +D EK + L G
Sbjct: 2356 IYVWTNVPDCDISRFYCYTKMLGEWMFTLTEKTKLLESFLP---KDSLEKFSELQNLSTG 2412
Query: 480 RYVEAIED 503
+++AI D
Sbjct: 2413 LHMQAIWD 2420
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 405 GPNFTP-GKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVG 536
G +F P GK ++ + Q + + RY+ DVP+G+I G+ G
Sbjct: 115 GSDFDPKGKSDNEIRRFSQAFMRQLFRYIGPQTDVPAGDI-GVTG 158
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 6 YKVFDAIMKFKKEEIDDLLKKIGVTIKHE---DSDKDGKALLKVVMR 137
Y+V + + F+K+ +D ++K + E +S K G+ ++ VV R
Sbjct: 350 YEVIEISIPFQKDMLDTVVKVFSADARFEINNESQKTGEPVVSVVKR 396
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -3
Query: 231 ITSPYDISGPLQVMVNEWQSSEAELHQQATKSASQ 127
+T P D PLQ+ N WQ + TK +
Sbjct: 965 LTIPVDQVAPLQLSANRWQPKKLTEKPAETKGEDE 999
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -2
Query: 130 TTFSKALPSLSESSCLIVTPIFLRRSSISSFLNF 29
T+ + +PSL ++S I++ F+R + S+ ++F
Sbjct: 359 TSAQQKMPSLGDNSNTIISKYFIREITESNIVHF 392
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 509 GHILNSFNITSHHKDCTLDSLLIQ 438
G+++N F + SHH L L+ Q
Sbjct: 573 GNVINGFIVRSHHDQLILKELMRQ 596
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +3
Query: 378 VTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRYVE 491
V G + P+ PG Y +T++R ++ YV+
Sbjct: 504 VLGSTEPVEPPSIEPGLPASAYSRTVERERFVLMAYVQ 541
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -2
Query: 385 PVTTLPEKTRPKA*KRPLSEVGTILLTYIISGASGSQLLIPMAASSSWGPSYNIS 221
P+T++ T A PL+ V + T S S + SS PSYN S
Sbjct: 358 PLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTS 412
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -2
Query: 385 PVTTLPEKTRPKA*KRPLSEVGTILLTYIISGASGSQLLIPMAASSSWGPSYNIS 221
P+T++ T A PL+ V + T S S + SS PSYN S
Sbjct: 472 PLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTS 526
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,845
Number of Sequences: 5004
Number of extensions: 50985
Number of successful extensions: 151
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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