Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12e22
(539 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 296 6e-81
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 296 6e-81
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 96 2e-20
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 96 2e-20
U00041-2|AAA50670.1| 128|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z66521-11|CAA91398.2| 471|Caenorhabditis elegans Hypothetical p... 28 3.7
Z29094-6|CAD45581.1| 457|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z29094-5|CAA82336.1| 465|Caenorhabditis elegans Hypothetical pr... 28 3.7
AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like ... 28 3.7
Z81493-4|CAB04041.1| 165|Caenorhabditis elegans Hypothetical pr... 27 6.5
AL034488-6|CAA22450.2| 467|Caenorhabditis elegans Hypothetical ... 27 6.5
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 296 bits (727), Expect = 6e-81
Identities = 131/179 (73%), Positives = 154/179 (86%)
Frame = +3
Query: 3 IYKVFDAIMKFKKEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAI 182
I+ VFDA+M KK++ L++K+G+ + +++ D +GK L+KV MR WLPAG+ +LQMIA
Sbjct: 291 IFMVFDAVMNIKKDKTAALVEKLGIKLANDEKDLEGKPLMKVFMRKWLPAGDTMLQMIAF 350
Query: 183 HLPSPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRV 362
HLPSPV AQKYRMEMLYEGPHDDEAA+ IK+CDP PLMMY+SKMVPTSDKGRFYAFGRV
Sbjct: 351 HLPSPVTAQKYRMEMLYEGPHDDEAAVAIKTCDPNGPLMMYISKMVPTSDKGRFYAFGRV 410
Query: 363 FSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGV 539
FSGKV TG KARI GPN+ PGKKEDLYEKTIQRTILMMGR++E IED+PSGNI GLVGV
Sbjct: 411 FSGKVATGMKARIQGPNYVPGKKEDLYEKTIQRTILMMGRFIEPIEDIPSGNIAGLVGV 469
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 296 bits (727), Expect = 6e-81
Identities = 131/179 (73%), Positives = 154/179 (86%)
Frame = +3
Query: 3 IYKVFDAIMKFKKEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAI 182
I+ VFDA+M KK++ L++K+G+ + +++ D +GK L+KV MR WLPAG+ +LQMIA
Sbjct: 291 IFMVFDAVMNIKKDKTAALVEKLGIKLANDEKDLEGKPLMKVFMRKWLPAGDTMLQMIAF 350
Query: 183 HLPSPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRV 362
HLPSPV AQKYRMEMLYEGPHDDEAA+ IK+CDP PLMMY+SKMVPTSDKGRFYAFGRV
Sbjct: 351 HLPSPVTAQKYRMEMLYEGPHDDEAAVAIKTCDPNGPLMMYISKMVPTSDKGRFYAFGRV 410
Query: 363 FSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGV 539
FSGKV TG KARI GPN+ PGKKEDLYEKTIQRTILMMGR++E IED+PSGNI GLVGV
Sbjct: 411 FSGKVATGMKARIQGPNYVPGKKEDLYEKTIQRTILMMGRFIEPIEDIPSGNIAGLVGV 469
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 95.9 bits (228), Expect = 2e-20
Identities = 43/171 (25%), Positives = 90/171 (52%)
Frame = +3
Query: 3 IYKVFDAIMKFKKEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAI 182
+YK+F ++ + D++ ++G+ + E+ + + L+ ++ + + A + ++
Sbjct: 381 MYKIFSQVVGDVDTCLPDVMAELGIRLSKEEQKMNVRPLIALICKRFFGDFSAFVDLVVQ 440
Query: 183 HLPSPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRV 362
++ SP+ K ++E Y GP D + A ++ C+ E PLM++ +K P D +F+ FGRV
Sbjct: 441 NIKSPLENAKTKIEQTYLGPADSQLAQEMQKCNAEGPLMVHTTKNYPVDDATQFHVFGRV 500
Query: 363 FSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSG 515
SG + R++G N++ +ED T+ R + + Y + VP+G
Sbjct: 501 MSGTLEANTDVRVLGENYSIQDEEDCRRMTVGRLFVRVASYQIEVSRVPAG 551
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 95.9 bits (228), Expect = 2e-20
Identities = 43/171 (25%), Positives = 90/171 (52%)
Frame = +3
Query: 3 IYKVFDAIMKFKKEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAI 182
+YK+F ++ + D++ ++G+ + E+ + + L+ ++ + + A + ++
Sbjct: 256 MYKIFSQVVGDVDTCLPDVMAELGIRLSKEEQKMNVRPLIALICKRFFGDFSAFVDLVVQ 315
Query: 183 HLPSPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRV 362
++ SP+ K ++E Y GP D + A ++ C+ E PLM++ +K P D +F+ FGRV
Sbjct: 316 NIKSPLENAKTKIEQTYLGPADSQLAQEMQKCNAEGPLMVHTTKNYPVDDATQFHVFGRV 375
Query: 363 FSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSG 515
SG + R++G N++ +ED T+ R + + Y + VP+G
Sbjct: 376 MSGTLEANTDVRVLGENYSIQDEEDCRRMTVGRLFVRVASYQIEVSRVPAG 426
>U00041-2|AAA50670.1| 128|Caenorhabditis elegans Hypothetical
protein C03B8.3 protein.
Length = 128
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 12 VFDAIMKFKKEEIDDLLKKIGVTIKHED 95
+FDA+ K ++ +D K + VTI HED
Sbjct: 69 LFDALRKITADQYNDHKKVVEVTIDHED 96
>Z66521-11|CAA91398.2| 471|Caenorhabditis elegans Hypothetical
protein W02B12.7 protein.
Length = 471
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +3
Query: 18 DAIMKFKKEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRS 140
DAI++ +E+ DL +I V I+ D ++DG + ++ ++
Sbjct: 129 DAIIRELNDEVVDLRGQIRVAIRVRDFERDGSSNFSIISQN 169
>Z29094-6|CAD45581.1| 457|Caenorhabditis elegans Hypothetical
protein C07A9.7b protein.
Length = 457
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 477 GRYVEAIEDVPSGN-ICGLVGV 539
GR+VEAIED+P G +C G+
Sbjct: 29 GRFVEAIEDIPIGTVVCVETGI 50
>Z29094-5|CAA82336.1| 465|Caenorhabditis elegans Hypothetical
protein C07A9.7a protein.
Length = 465
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 477 GRYVEAIEDVPSGN-ICGLVGV 539
GR+VEAIED+P G +C G+
Sbjct: 29 GRFVEAIEDIPIGTVVCVETGI 50
>AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like
protein protein.
Length = 605
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +3
Query: 18 DAIMKFKKEEIDDLLKKIGVTIKHEDSDKDGKALLKVVMRS 140
DAI++ +E+ DL +I V I+ D ++DG + ++ ++
Sbjct: 263 DAIIRELNDEVVDLRGQIRVAIRVRDFERDGSSNFSIISQN 303
>Z81493-4|CAB04041.1| 165|Caenorhabditis elegans Hypothetical
protein F01D5.5 protein.
Length = 165
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -2
Query: 415 KFGPMMRAFCPVT--TLPEKTRPK 350
K+ PM++AFCPVT P T P+
Sbjct: 72 KYTPMLKAFCPVTCNMCPGATTPE 95
>AL034488-6|CAA22450.2| 467|Caenorhabditis elegans Hypothetical
protein Y54G11A.7 protein.
Length = 467
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 410 WSHDASFLSGNNLARENASKGVETTFVGGRHHLAHVHHQWGF 285
+SHDA F +GN + ++NA + V + +++H + F
Sbjct: 147 FSHDAHFFNGNQIGKKNAIEKVIHKWNADLPCYSYLHGMYAF 188
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,412,177
Number of Sequences: 27780
Number of extensions: 296556
Number of successful extensions: 887
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -