Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e22
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.1  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   6.1  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 389 KSSHHGTKLYTWKERGLV*EDYPAYNPYDGTL 484
           +S H+  +L  W+   +V  DY  Y+  D  L
Sbjct: 272 ESDHNDGRLRYWRTPSVVVSDYSDYSYLDEKL 303


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +3

Query: 126 VVMRSWLPAGEALLQMIAIHLPSPVV 203
           +V  SW+P+    +Q      P P++
Sbjct: 471 LVWNSWMPSIRGAIQQWTCRQPEPLI 496


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/44 (20%), Positives = 21/44 (47%)
 Frame = -3

Query: 378 QPCQRKRVQRRRNDLCRRSAPSCSRTSSVGLQDHSS*YQWQLHH 247
           Q   + + +RR+ +L +      +   S+  +DH+    W ++H
Sbjct: 1   QKVHQLKKKRRKKNLNQNQMMIWALDCSIKPKDHNGSIYWSMYH 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,629
Number of Sequences: 438
Number of extensions: 3681
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)