Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e19
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   239   8e-64
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   131   3e-31
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   3.4  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  239 bits (585), Expect = 8e-64
 Identities = 111/151 (73%), Positives = 127/151 (84%)
 Frame = +3

Query: 54  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 233
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 234 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 413
           +GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA 
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125

Query: 414 CLRRRTYRAHGRINPYMSSPCHIEVCLSERE 506
            LRRRTYRAHGRINPYMSSPCHIEV L+E+E
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEVILAEKE 156


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  131 bits (316), Expect = 3e-31
 Identities = 79/151 (52%), Positives = 92/151 (60%)
 Frame = +3

Query: 54  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 233
           YSR P+N  KSCKARGS+LRVHFKNT+E A     M LR               +P RR 
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAA-----MALRG--------------MPLRRA 46

Query: 234 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 413
              +    + K+    +           L LL+NAESNA+ K LDVD LVI+HI V RA 
Sbjct: 47  QAFLNHVKEHKEIVPFRR---------FLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 97

Query: 414 CLRRRTYRAHGRINPYMSSPCHIEVCLSERE 506
            LRRRTYRAHGRINPYMSSPCHIEV L+E+E
Sbjct: 98  KLRRRTYRAHGRINPYMSSPCHIEVILAEKE 128


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 239 AVEATEWNTLFLFN--HVFEVTNSTTERHLSDCHCGLICVLKVN 114
           AV A  W  L +F+  + FE+ NS +    S CHC  +C   +N
Sbjct: 278 AVFAVAWLPLNVFHIFNTFELVNSFSVTTFSICHCLAMCSACLN 321


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +3

Query: 291 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 452
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 453 NPYMSSPCHIEVCLSER 503
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -2

Query: 480 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 352
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,073,343
Number of Sequences: 27780
Number of extensions: 246677
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)