Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e16
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   4.1  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   5.4  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   9.4  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   9.4  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 18  RRKHVRRILSYFDFELRFCS 77
           + KHVR  L   +F  +FC+
Sbjct: 531 KTKHVRAFLGLCNFYRKFCA 550


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 384 CGQTRLWQIPIG 419
           CG T+LW  P G
Sbjct: 86  CGSTQLWPQPTG 97


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 154 PCGEGPIFCALKKNKP 201
           P G   + CAL+K+KP
Sbjct: 99  PTGPPIVRCALRKHKP 114


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 31  YAVFCLILISNYAFVQGEFVFKKKCRDVDT 120
           Y     ++ISNYA  + E      C D DT
Sbjct: 595 YPCHLFVMISNYADDRVEQDTSGTCSDGDT 624


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 272 TSPFMTACNLFAE 234
           T PF T CN+  E
Sbjct: 426 TGPFFTFCNVLME 438


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,178
Number of Sequences: 336
Number of extensions: 2917
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)