Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e15
         (269 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973...    27   2.7  
01_07_0302 - 42611150-42611812,42611881-42611961,42612064-426121...    27   2.7  
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680     26   3.6  
08_01_0245 + 2023442-2023786,2024485-2024841,2024951-2025393,202...    25   6.3  
04_03_0643 + 18328807-18331969,18332560-18332627                       25   8.3  

>11_06_0047 +
           19595904-19596185,19596284-19596424,19597195-19597307,
           19597970-19598049,19598557-19598720,19598931-19599060,
           19599155-19599254,19599452-19599500,19599775-19599849,
           19600026-19600124,19600745-19600823,19600897-19601045,
           19601334-19601393,19601490-19601684
          Length = 571

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 58  PSFFIITAAVGLPGWGLYHIHNLTLGNHYRRS 153
           P+F  ITAAVG+  WG   +   +L   YR S
Sbjct: 305 PNFSRITAAVGIWSWGAISLAFASLVMFYRVS 336


>01_07_0302 -
           42611150-42611812,42611881-42611961,42612064-42612150,
           42612283-42612378,42612479-42612543,42612919-42612975,
           42613066-42613147,42613235-42613327,42613714-42613785,
           42613881-42613985
          Length = 466

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 115 IHNLTLGNHY--RRSLTDRWSRALYQRDMRLTGNPY-EVNGL 231
           I NL LGN+   RRS  +  S   Y R++ L GNP  E +GL
Sbjct: 202 ILNLDLGNNLIERRSDLEVLSELHYLRNLNLQGNPIAEKDGL 243


>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
          Length = 936

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 97  GWGLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGNPYEVNGLE 234
           GW ++H    TL N  + S+    +R+    ++    +PYE+NGL+
Sbjct: 342 GWRIFH---RTLSNGLQGSMILVTTRSSKVANLVSNSDPYELNGLQ 384


>08_01_0245 +
           2023442-2023786,2024485-2024841,2024951-2025393,
           2025475-2025569,2026302-2026477
          Length = 471

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 250 NYPG*LPSHSLHKDYQ*ASYPSGTTHDSI 164
           +YPG  P HS  KD   A Y S T  +++
Sbjct: 384 DYPGVGPEHSFLKDIGRAEYDSVTDQEAL 412


>04_03_0643 + 18328807-18331969,18332560-18332627
          Length = 1076

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 97  GWGLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGNPYEVNGLE 234
           GW  +H    TL N  + S+    +R+    ++    +PYE+NGL+
Sbjct: 342 GWRTFH---RTLSNGLQGSMILVTTRSSKVANLVSNSDPYELNGLQ 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,617,871
Number of Sequences: 37544
Number of extensions: 107525
Number of successful extensions: 252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)