Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e14
         (313 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141     25   9.5  
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646...    25   9.5  
03_05_0231 - 22170343-22172004,22172225-22172449                       25   9.5  

>04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141
          Length = 606

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 237 ATVAESSQKLVTVAEATTSQSWPTAPRR 154
           A  A +  +L  V E  T + W TAP R
Sbjct: 188 AAAAANGARLAEVYEELTQRGWDTAPAR 215


>04_03_0156 -
           11963580-11963914,11964422-11964517,11964618-11964697,
           11965250-11965290,11965402-11965548,11965922-11966035,
           11968842-11968961,11969491-11969631,11969892-11970014,
           11970357-11970566
          Length = 468

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +1

Query: 199 DGDELLRAFGDSCSWDGDLTYXQLLRD 279
           D   LLRA G S S DGD    Q L D
Sbjct: 413 DVSRLLRALGQSHSRDGDKLTVQYLAD 439


>03_05_0231 - 22170343-22172004,22172225-22172449
          Length = 628

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 190 RLCDGDELLRAFGDSCSWD 246
           +LC     LRAFGD  +WD
Sbjct: 550 KLCVRGGRLRAFGDDVTWD 568


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,201,252
Number of Sequences: 37544
Number of extensions: 99427
Number of successful extensions: 284
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)