Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e14
         (313 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-2|ABD94115.1|   93|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z54342-1|CAA91143.1|  505|Caenorhabditis elegans Hypothetical pr...    27   2.8  
U88181-4|AAU05583.1|  299|Caenorhabditis elegans Hypothetical pr...    27   3.6  
U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AF077540-4|AAY55876.1|  111|Caenorhabditis elegans Hypothetical ...    26   4.8  
Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical p...    26   6.4  
Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical pr...    26   6.4  
U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical p...    26   6.4  
U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ...    26   6.4  
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ...    26   6.4  
AC024214-9|AAF36079.1|  790|Caenorhabditis elegans Calpain famil...    25   8.4  
AC006663-5|AAY43999.1|  490|Caenorhabditis elegans Hypothetical ...    25   8.4  

>U40029-2|ABD94115.1|   93|Caenorhabditis elegans Hypothetical
           protein F10G7.12 protein.
          Length = 93

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 216 QKLVTVAEATTSQSWPTAPRRF 151
           +KL+T+A  T+S  WP   RR+
Sbjct: 70  KKLITIASCTSSSQWPERHRRW 91


>Z54342-1|CAA91143.1|  505|Caenorhabditis elegans Hypothetical
           protein C08H9.1 protein.
          Length = 505

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +1

Query: 28  RIKLIFSKRIVHSTKFMAMNVIWTKDKLHKIFSAESISANVEASRGCRPTLARCRLCD 201
           RI  +F+K   HST   A    W  D LHK  + + +   +   R  +    +  +C+
Sbjct: 324 RISALFNK---HSTDGQASYRCWADDALHKYLNLKEVQNALGIDRAWKDRKKKWEVCN 378


>U88181-4|AAU05583.1|  299|Caenorhabditis elegans Hypothetical
           protein C55B6.1b protein.
          Length = 299

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 91  IWTKDKLHKIFSAESI-SANVEASRGCRPT 177
           IWTK+KL ++ + E I + N E+ +G   T
Sbjct: 254 IWTKEKLRELVTVEDIFTPNYESRKGLLKT 283


>U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical
           protein C55B6.1a protein.
          Length = 523

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 91  IWTKDKLHKIFSAESI-SANVEASRGCRPT 177
           IWTK+KL ++ + E I + N E+ +G   T
Sbjct: 478 IWTKEKLRELVTVEDIFTPNYESRKGLLKT 507


>AF077540-4|AAY55876.1|  111|Caenorhabditis elegans Hypothetical
           protein T07H3.7 protein.
          Length = 111

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 178 LARCRLCDGDELLRAFGD 231
           L  C++CDGD L +  GD
Sbjct: 84  LTPCQMCDGDSLTQDLGD 101


>Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 4   YKLTXIQYRIKLIFSKRIVHSTKFMAMNVIWTKDKLHKIFSAESISANVEASR-GCRPTL 180
           Y ++ I + I L  S  I+  T     +V WT   LH   +A  +S +  A    C PT+
Sbjct: 20  YVISGISFPIHLFGSYCILFQTSATMKSVKWTLFNLHFWSAALDLSISFLAQPFFCTPTM 79

Query: 181 A 183
           A
Sbjct: 80  A 80


>Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 4   YKLTXIQYRIKLIFSKRIVHSTKFMAMNVIWTKDKLHKIFSAESISANVEASR-GCRPTL 180
           Y ++ I + I L  S  I+  T     +V WT   LH   +A  +S +  A    C PT+
Sbjct: 20  YVISGISFPIHLFGSYCILFQTSATMKSVKWTLFNLHFWSAALDLSISFLAQPFFCTPTM 79

Query: 181 A 183
           A
Sbjct: 80  A 80


>U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical
           protein C25E10.10 protein.
          Length = 169

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 166 CRPTLARCRLCDGDELLRAFGDSC 237
           C P   R   C+GDE L+A G +C
Sbjct: 67  CVPIPIRKPECEGDEELKACGSAC 90


>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
           protein 25, isoformb protein.
          Length = 1130

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 243 PRATVAESSQKLVTVAEATTSQSWPTAP 160
           PR+ V   +   V  A A T Q  PTAP
Sbjct: 417 PRSVVFAQTNNAVAAATAVTPQKVPTAP 444


>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
           protein 25, isoforma protein.
          Length = 1237

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 243 PRATVAESSQKLVTVAEATTSQSWPTAP 160
           PR+ V   +   V  A A T Q  PTAP
Sbjct: 417 PRSVVFAQTNNAVAAATAVTPQKVPTAP 444


>AC024214-9|AAF36079.1|  790|Caenorhabditis elegans Calpain family
           protein 6 protein.
          Length = 790

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 125 VLNLYRRTSKRRGAVGQLWLVVASATVTSFCEL 223
           ++N   R   R+G++G  W + A+AT+    EL
Sbjct: 195 IVNGKSRFDVRQGSLGNCWFLAAAATLAQRDEL 227


>AC006663-5|AAY43999.1|  490|Caenorhabditis elegans Hypothetical
           protein H24K24.2 protein.
          Length = 490

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +2

Query: 110 YTRYSVLNLYRRTSKRRGAVGQLWLVVASATVTSFCELS 226
           Y  +S+L ++   +K      +LW ++  + +  +C LS
Sbjct: 421 YIVFSILAIFMNKAKNTSTQDELWNLINMSMMQIYCRLS 459


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,519,309
Number of Sequences: 27780
Number of extensions: 89169
Number of successful extensions: 224
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)