Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e13
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    30   0.27 
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   3.3  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    26   4.3  
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    25   5.7  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   5.7  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   7.5  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.5  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   10.0 
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   10.0 

>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
 Frame = +3

Query: 432  SWCTNKRLWRRNN*EK----TYPCQSCSI*KRWSE---TYENEI 542
            S C N+RLWRRN  EK    T P    S   RW++   T+ N I
Sbjct: 948  SICYNQRLWRRNRNEKLIYRTRPLAEYSTNGRWNQQLMTFNNTI 991


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 136 QTKFRTNTRYFSSEKESGLTKSKSKESASHVSTDV 240
           + K+ ++ RY SS K+SG+ ++   +      T++
Sbjct: 22  RNKYHSHVRYLSSAKKSGILRNSYNQRTERYFTNI 56


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 423 YSRILFALLKSF*VNAVRTVT*EQFSKNVKENHT 322
           Y   L A LK   VN +RTV  E +S+ +K+N T
Sbjct: 192 YEEFLDAYLKD--VNTLRTVIKEHWSRFLKDNST 223


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 376 SIYSEALEKCKQDPRVEDALGAPIKG 453
           SIY EA   CK D RV +A+G  ++G
Sbjct: 78  SIYQEA---CKLDARVIEAIGEVLRG 100


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 252 RKNQRNYKNCFLHRRNTSRCRS 317
           RK    +KN FL R+N+S+ +S
Sbjct: 37  RKGLSKFKNSFLSRKNSSQIKS 58


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 145 FRTNTR-YFSSEKESGLTKSKSKESASHVSTDV 240
           FR N   Y+SS   S L +S+ +   +HVST +
Sbjct: 205 FRQNKPVYWSSSSRSALAESEIEYDDNHVSTSI 237


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 100 IRSTTEKIP-AILQTKFRTNTRYFSSEKESGLTKSKSKESASHVSTDVRPLGEKIKETTK 276
           +RS+  K+  A+LQ    T T + +    SGL  S + E+  HV  + + L +++ +  K
Sbjct: 13  LRSSNAKVSDALLQN---TRTLFTAPPLHSGLQTSFTAETQQHVRQNSQNLLKQLNDEMK 69

Query: 277 TVSY 288
              Y
Sbjct: 70  ARKY 73


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 519 SIFFIYCMTDMGTSSPSCFFSITFY 445
           ++F  YC+ D  TS+ S FF +  +
Sbjct: 496 TVFEKYCLLDHSTSTISLFFGLLIF 520


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 555 PFNIESHSHMFHSIFFIYCMTDMGTSSPSCFFSITF 448
           P  + +    +  IF++  MTD G  S    FS  F
Sbjct: 518 PIKLFASEDPYAEIFYLLAMTDDGEQSNYSLFSFNF 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,046
Number of Sequences: 5004
Number of extensions: 30053
Number of successful extensions: 74
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)