Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e13
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0394 - 8081172-8081330,8082015-8082134,8082223-8082271,808...    49   3e-06
04_01_0163 + 1853448-1853668,1853963-1854161                           27   7.7  
02_04_0663 + 24820745-24821065,24821415-24821861,24821949-248223...    27   7.7  

>03_02_0394 -
           8081172-8081330,8082015-8082134,8082223-8082271,
           8083193-8083371,8083583-8083852,8084480-8084631,
           8085694-8085715,8086314-8086430
          Length = 355

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
 Frame = +1

Query: 334 FYVFRELFSSNSPNSIYSEALEKCKQDPRVEDALGAPIKGYG-EEXXXXXXXHVSHAVY- 507
           + VF+EL        I+ +AL + + D +V   +G P+ GYG E         + + V+ 
Sbjct: 235 YAVFKELIFEPKEYKIFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPNKVWT 294

Query: 508 EKDGVKHMRMRFYIKG 555
           ++DGV+H+ + FYI+G
Sbjct: 295 DEDGVEHVEVNFYIRG 310


>04_01_0163 + 1853448-1853668,1853963-1854161
          Length = 139

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 376 SIYSEALEKCKQDPRVEDALGAPI 447
           S  S+A+EK  Q+ ++ +A+GAPI
Sbjct: 71  SCSSQAIEKASQNQQIVNAIGAPI 94


>02_04_0663 +
           24820745-24821065,24821415-24821861,24821949-24822317,
           24822324-24822835,24822914-24823084,24823284-24823434,
           24823664-24823702
          Length = 669

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 525 FHSIFFIYCMTDMGTSSPSCFFSITFYWCTK 433
           F  +F +Y +  M TS   C+  +++ WC K
Sbjct: 528 FKDLFDLYRLRAMDTSLLKCYSLLSWQWCQK 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.131    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,797,386
Number of Sequences: 37544
Number of extensions: 168755
Number of successful extensions: 306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)