Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12e13
(558 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045646-13|AAK29831.1| 213|Caenorhabditis elegans Hypothetical... 73 1e-13
Z48334-3|CAA88310.1| 471|Caenorhabditis elegans Hypothetical pr... 31 0.74
Z69302-10|CAA93267.1| 295|Caenorhabditis elegans Hypothetical p... 29 3.0
Z47074-3|CAA87376.1| 295|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF008590-1|AAB63299.1| 295|Caenorhabditis elegans paraquat resp... 29 3.0
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr... 28 5.2
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein. 28 5.2
Z81077-12|CAH19097.1| 316|Caenorhabditis elegans Hypothetical p... 27 9.1
>AF045646-13|AAK29831.1| 213|Caenorhabditis elegans Hypothetical
protein F56B3.11a protein.
Length = 213
Score = 72.9 bits (171), Expect = 1e-13
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Frame = +1
Query: 172 SEKESGLTKSKSKESASHVSTDVRPLGEKIKETTKTVSYXXXXXXXXXXXXXXFFYVFR- 348
S++E L +S +E H G K+ E ++ F YV
Sbjct: 45 SKQEHALQRSILEEVLVHEKAKPTTFGGKVAEKASN-TFMYTAVVAGIGLIGAFIYVLAG 103
Query: 349 ELFSSNSPNSIYSEALEKCKQDPRVEDALGAPIKGYGEEXXXXXXXHVSHAVYEKDGVKH 528
E F+ +SP +I+++AL + D R ++ GA I G+GEE HV+H YEKDG++
Sbjct: 104 EFFAQDSPQTIFNKALALVRDDGRCQEIFGASIAGFGEETSRGRRRHVAHHKYEKDGMQR 163
Query: 529 MRMRFYIKG 555
+R+ F++KG
Sbjct: 164 IRVLFHVKG 172
>Z48334-3|CAA88310.1| 471|Caenorhabditis elegans Hypothetical
protein F10B5.3 protein.
Length = 471
Score = 30.7 bits (66), Expect = 0.74
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = +3
Query: 198 IQKQRKCFPCIYRCKTLRRKNQRNYKNCFLHRRNTSRCRSHRCDFLLRFSRTVLK*QSEQ 377
I+K F C K R N +Y HR +C + C+F R +R + + +
Sbjct: 248 IEKVDGGFMCTVCRKIYGRYNSVSYHVTIYHRNPPIKCEENGCNFSTREARYIHFHKYYR 307
Query: 378 HLLRSS*EVQTGS*SRRCSWC 440
H + + G SR+C +C
Sbjct: 308 HHIPLPENIDLG--SRKCPFC 326
>Z69302-10|CAA93267.1| 295|Caenorhabditis elegans Hypothetical
protein F40F8.7 protein.
Length = 295
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/81 (23%), Positives = 32/81 (39%)
Frame = +3
Query: 198 IQKQRKCFPCIYRCKTLRRKNQRNYKNCFLHRRNTSRCRSHRCDFLLRFSRTVLK*QSEQ 377
I++ + C K R N +Y HR +C C F R +R + ++ +
Sbjct: 154 IEQTENGYMCTVCRKVYGRYNSVSYHVTIYHRNPPIKCNVPNCQFTTREARYIHFHKNYR 213
Query: 378 HLLRSS*EVQTGS*SRRCSWC 440
H + + G SR+C C
Sbjct: 214 HGIPLPESIDQG--SRKCPHC 232
>Z47074-3|CAA87376.1| 295|Caenorhabditis elegans Hypothetical
protein F40F8.7 protein.
Length = 295
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/81 (23%), Positives = 32/81 (39%)
Frame = +3
Query: 198 IQKQRKCFPCIYRCKTLRRKNQRNYKNCFLHRRNTSRCRSHRCDFLLRFSRTVLK*QSEQ 377
I++ + C K R N +Y HR +C C F R +R + ++ +
Sbjct: 154 IEQTENGYMCTVCRKVYGRYNSVSYHVTIYHRNPPIKCNVPNCQFTTREARYIHFHKNYR 213
Query: 378 HLLRSS*EVQTGS*SRRCSWC 440
H + + G SR+C C
Sbjct: 214 HGIPLPESIDQG--SRKCPHC 232
>AF008590-1|AAB63299.1| 295|Caenorhabditis elegans paraquat
responsive protein protein.
Length = 295
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/81 (23%), Positives = 32/81 (39%)
Frame = +3
Query: 198 IQKQRKCFPCIYRCKTLRRKNQRNYKNCFLHRRNTSRCRSHRCDFLLRFSRTVLK*QSEQ 377
I++ + C K R N +Y HR +C C F R +R + ++ +
Sbjct: 154 IEQTENGYMCTVCRKVYGRYNSVSYHVTIYHRNPPIKCNVPNCQFTTREARYIHFHKNYR 213
Query: 378 HLLRSS*EVQTGS*SRRCSWC 440
H + + G SR+C C
Sbjct: 214 HGIPLPESIDQG--SRKCPHC 232
>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical protein
F09E8.3 protein.
Length = 1369
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 85 DDEITIRSTTEKIPAILQTKFRTNT-RYFSSEKESGLTKSKSKESASHVSTDVRPLGE 255
D E I ST +P + F T SSEK+ L K+K + S S +S LG+
Sbjct: 1229 DGEKKIDSTKTSMPIVNSDNFIFKTPEPRSSEKQRSLLKNKGQASNSSISPSSLILGQ 1286
>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
Length = 1369
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 85 DDEITIRSTTEKIPAILQTKFRTNT-RYFSSEKESGLTKSKSKESASHVSTDVRPLGE 255
D E I ST +P + F T SSEK+ L K+K + S S +S LG+
Sbjct: 1229 DGEKKIDSTKTSMPIVNSDNFIFKTPEPRSSEKQRSLLKNKGQASNSSISPSSLILGQ 1286
>Z81077-12|CAH19097.1| 316|Caenorhabditis elegans Hypothetical
protein F36A2.14 protein.
Length = 316
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 136 QTKFRTNTRYFSSEKESGLTKSKSKESASHVSTDVRPLGEKIKETTKTVS 285
+ K + R S+ ESG ++ SK++A + + +ET KTVS
Sbjct: 83 EEKKKKKERMKKSKDESGSSRKNSKKTAEDMDQSSDDTTKPAEETKKTVS 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.131 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,046,943
Number of Sequences: 27780
Number of extensions: 171873
Number of successful extensions: 347
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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