Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e12
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.2  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    27   2.8  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   3.7  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    26   4.9  

>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 75  NVLKHNYTVGSFTNMLSKCRNNENVSPLLKIS*TSKMSLRPDN 203
           ++  + Y   S  N++ K  +NE +S LLKI   S  +L  DN
Sbjct: 541 DICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDN 583


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +3

Query: 354 YDFTVERHSPLLYNLFESTAYLIKGFFGAGILNVHVAYMFAGLWTSLVV 500
           Y     R+ P L ++ + +  L   FFG G+L+ ++ ++F G + +  +
Sbjct: 240 YSHIAFRYFPWLPHVGDCSGSLFAAFFGCGVLSSYL-FLFIGFYINTYI 287


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 351 NYDFTVERHSPLLYNLFESTAYLIKGFFG 437
           +Y++T +RH    YNL E+  +L+ GF G
Sbjct: 93  SYEYT-KRHLMSNYNLPETLCFLLAGFVG 120


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 435 GAGILNVHVAYMFAGLWTSLVVTFVMGGIICRCMMLLVKS 554
           GA    ++    F+GLW  L V  VM G +     L+  S
Sbjct: 260 GAAAARIYKEIGFSGLWNGLGVRIVMIGTLTGAQWLIYDS 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,399
Number of Sequences: 5004
Number of extensions: 47970
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)