Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e12
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0182 - 13930436-13931245,13931348-13931627,13931788-139323...    30   1.2  
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224     27   8.7  

>08_02_0182 -
           13930436-13931245,13931348-13931627,13931788-13932324,
           13932482-13932579,13932678-13933118
          Length = 721

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 215 IVFGVIRPQRHFAGLGNF*ERRYIFII 135
           I++GV+ P R F  LGN+ +  Y F++
Sbjct: 563 IIWGVVGPLRMFGRLGNYWQMNYFFLV 589


>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
          Length = 787

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 75  NVLKHNYTVGSFTNMLSKCRNNENVSPLLKIS*TSKMSLRPDNT 206
           +V++H + +   TN+ + C  N  V  LL +       LRP++T
Sbjct: 292 SVIEHAHAIRGITNLGNTCYLNSLVQCLLALGRLRARMLRPEDT 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,478,956
Number of Sequences: 37544
Number of extensions: 275578
Number of successful extensions: 578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)